Published February 22, 2019 | Version v1
Journal article

Chromatin remodelers as active Brownian dimers

  • 1. University of Lille, UGSF CNRS UMR8576, 59000 Lille (France)
  • 2. Institute Lorentz for Theoretical Physics, Leiden University, Niels Bohrweg 2, 2333 CA Leiden (Netherlands)

Description

Chromatin remodelers are molecular motors which actively displace nucleosomes on chromatin. Recent results on the structural properties of these motors indicate that the displacement of nucleosomal DNA corresponds to an inchworm motion induced by the generation and propagation of twist defects. Here we show that this basic action mechanism can be described by a coarse-grained active Brownian dimer (ABD) model, thereby quantitatively rationalizing the notion of inchworm motion. The model allows for extensions to more microscopic as well towards more macroscopic descriptions of chromatin hydrodynamics. (paper)

Availability note (English)

Available from http://dx.doi.org/10.1088/1751-8121/aafea0

Additional details

Identifiers

Publishing Information

Journal Title
Journal of Physics. A, Mathematical and Theoretical (Online)
Journal Volume
52
Journal Issue
8
Journal Page Range
[7 p.]
ISSN
1751-8121

INIS

Country of Publication
United Kingdom
Country of Input or Organization
International Atomic Energy Agency (IAEA)
INIS RN
52025574
Subject category
S71: CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSICS;
Descriptors DEI
BIOPHYSICS; DEFECTS; DIMERS; DNA; HYDRODYNAMICS; NUCLEOSOMES; SIMULATION
Descriptors DEC
CHROMATIN; FLUID MECHANICS; MECHANICS; NUCLEIC ACIDS; ORGANIC COMPOUNDS; PHYSICS