Published March 14, 2011 | Version v1
Journal article

Darwinian Model Building

  • 1. SRON Netherlands Institute for Space Research, Landleven 12, 9747 AD Groningen (Netherlands)
  • 2. Bontekoe Research, Rooseveltstraat 4d, 2321 BM Leiden (Netherlands)

Description

We present a way to generate heuristic mathematical models based on the Darwinian principles of variation and selection in a pool of individuals over many generations. Each individual has a genotype (the hereditary properties) and a phenotype (the expression of these properties in the environment). Variation is achieved by cross-over and mutation operations on the genotype which consists in the present case of a single chromosome. The genotypes 'live' in the environment of the data. Nested Sampling is used to optimize the free parameters of the models given the data, thus giving rise to the phenotypes. Selection is based on the phenotypes.The evidences which naturally follow from the Nested Sampling Algorithm are used in a second level of Nested Sampling to find increasingly better models.The data in this paper originate from the Leiden Cytology and Pathology Laboratory (LCPL), which screens pap smears for cervical cancer. We have data for 1750 women who on average underwent 5 tests each. The data on individual women are treated as a small time series. We will try to estimate the next value of the prime cancer indicator from previous tests of the same woman.

Additional details

Identifiers

Publishing Information

Journal Title
AIP Conference Proceedings
Journal Volume
1305
Journal Issue
1
Journal Page Range
p. 49-56
ISSN
0094-243X
CODEN
APCPCS

Conference

Title
30. international workshop on Bayesian inference and maximum entropy methods in science and engineering
Dates
4-9 Jul 2010
Place
Chamonix (France)

INIS

Country of Publication
United States
Country of Input or Organization
International Atomic Energy Agency (IAEA)
INIS RN
42099880
Subject category
S97: MATHEMATICAL METHODS AND COMPUTING;
Resource subtype / Literary indicator
Conference
Descriptors DEI
ALGORITHMS; BIOPHYSICS; CHROMOSOMES; CYTOLOGY; ENVIRONMENT; FORECASTING; GENOTYPE; MUTATIONS; NEOPLASMS; PHENOTYPE; SAMPLING; SCREENS; SIMULATION; STRING MODELS; STRING THEORY; WOMEN
Descriptors DEC
ANIMALS; BIOLOGY; COMPOSITE MODELS; DISEASES; EXTENDED PARTICLE MODEL; FEMALES; MAMMALS; MAN; MATHEMATICAL LOGIC; MATHEMATICAL MODELS; M-THEORY; PARTICLE MODELS; PHYSICS; PRIMATES; QUARK MODEL; VERTEBRATES

Optional Information

Notes
(c) 2011 American Institute of Physics