Darwinian Model Building
Creators
- 1. SRON Netherlands Institute for Space Research, Landleven 12, 9747 AD Groningen (Netherlands)
- 2. Bontekoe Research, Rooseveltstraat 4d, 2321 BM Leiden (Netherlands)
Description
We present a way to generate heuristic mathematical models based on the Darwinian principles of variation and selection in a pool of individuals over many generations. Each individual has a genotype (the hereditary properties) and a phenotype (the expression of these properties in the environment). Variation is achieved by cross-over and mutation operations on the genotype which consists in the present case of a single chromosome. The genotypes 'live' in the environment of the data. Nested Sampling is used to optimize the free parameters of the models given the data, thus giving rise to the phenotypes. Selection is based on the phenotypes.The evidences which naturally follow from the Nested Sampling Algorithm are used in a second level of Nested Sampling to find increasingly better models.The data in this paper originate from the Leiden Cytology and Pathology Laboratory (LCPL), which screens pap smears for cervical cancer. We have data for 1750 women who on average underwent 5 tests each. The data on individual women are treated as a small time series. We will try to estimate the next value of the prime cancer indicator from previous tests of the same woman.
Additional details
Identifiers
- DOI
- 10.1063/1.3573656;
Publishing Information
- Journal Title
- AIP Conference Proceedings
- Journal Volume
- 1305
- Journal Issue
- 1
- Journal Page Range
- p. 49-56
- ISSN
- 0094-243X
- CODEN
- APCPCS
Conference
- Title
- 30. international workshop on Bayesian inference and maximum entropy methods in science and engineering
- Dates
- 4-9 Jul 2010
- Place
- Chamonix (France)
INIS
- Country of Publication
- United States
- Country of Input or Organization
- International Atomic Energy Agency (IAEA)
- INIS RN
- 42099880
- Subject category
- S97: MATHEMATICAL METHODS AND COMPUTING;
- Resource subtype / Literary indicator
- Conference
- Descriptors DEI
- ALGORITHMS; BIOPHYSICS; CHROMOSOMES; CYTOLOGY; ENVIRONMENT; FORECASTING; GENOTYPE; MUTATIONS; NEOPLASMS; PHENOTYPE; SAMPLING; SCREENS; SIMULATION; STRING MODELS; STRING THEORY; WOMEN
- Descriptors DEC
- ANIMALS; BIOLOGY; COMPOSITE MODELS; DISEASES; EXTENDED PARTICLE MODEL; FEMALES; MAMMALS; MAN; MATHEMATICAL LOGIC; MATHEMATICAL MODELS; M-THEORY; PARTICLE MODELS; PHYSICS; PRIMATES; QUARK MODEL; VERTEBRATES
Optional Information
- Notes
- (c) 2011 American Institute of Physics