Published September 1, 2010 | Version v1
Journal article

Using a one-dimensional lattice applied to the thermodynamic study of DNA

  • 1. Sao Paulo State University - UNESP, Instituto de Biociencias, Letras e Ciencias Exatas, Rua Cristovao Colombo, 2265, CEP 15054-000, Sao Jose do Rio Preto, SP (Brazil)

Description

In this work it is analyzed a one-dimensional lattice which is composed by mass-spring systems with one additional Rosen-Morse potential on site. This kind of lattice is used to study thermodynamic properties of DNA, especially its thermal denaturation. On the context of this work, the Rosen-Morse potential simulates hydrogen bonds between double strands of the molecule. From the graphic of the average stretching of base pairs versus temperature it is possible to observe the thermal denaturation of the system. This result shows that it is possible to obtain phase transition with an asymmetric potential without an infinite barrier.

Availability note (English)

Available from http://dx.doi.org/10.1088/1742-6596/246/1/012037

Additional details

Publishing Information

Journal Title
Journal of Physics. Conference Series (Online)
Journal Volume
246
Journal Issue
1
Journal Page Range
[6 p.]
ISSN
1742-6596

Conference

Title
15. Latin American workshop on nonlinear phenomena
Dates
5-9 Oct 2009
Place
Buzios, RJ (Brazil)

INIS

Country of Publication
United Kingdom
Country of Input or Organization
International Atomic Energy Agency (IAEA)
INIS RN
42053900
Subject category
S75: CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND SUPERFLUIDITY; S71: CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSICS;
Resource subtype / Literary indicator
Conference
Descriptors DEI
ASYMMETRY; CHEMICAL BONDS; DNA; MASS; MOLECULES; MORSE POTENTIAL; ONE-DIMENSIONAL CALCULATIONS; PHASE TRANSFORMATIONS; TEMPERATURE DEPENDENCE; THERMODYNAMIC PROPERTIES
Descriptors DEC
NUCLEIC ACIDS; ORGANIC COMPOUNDS; PHYSICAL PROPERTIES; POTENTIALS