Published July 11, 2018 | Version v1
Journal article

Theory of pore-driven and end-pulled polymer translocation dynamics through a nanopore: an overview

  • 1. School of Nano Science, Institute for Research in Fundamental Sciences (IPM), 19395-5531, Tehran (Iran, Islamic Republic of)
  • 2. Interdisciplinary Centre for Mathematical Modelling, Loughborough University, Loughborough, Leicestershire LE11 3TU (United Kingdom)

Description

We review recent progress on the theory of dynamics of polymer translocation through a nanopore based on the iso-flux tension propagation (IFTP) theory. We investigate both pore-driven translocation of flexible and a semi-flexible polymers, and the end-pulled case of flexible chains by means of the IFTP theory and extensive molecular dynamics (MD) simulations. The validity of the IFTP theory can be quantified by the waiting time distributions of the monomers which reveal the details of the dynamics of the translocation process. The IFTP theory allows a parameter-free description of the translocation process and can be used to derive exact analytic scaling forms in the appropriate limits, including the influence due to the pore friction that appears as a finite-size correction to asymptotic scaling. We show that in the case of pore-driven semi-flexible and end-pulled polymer chains the IFTP theory must be augmented with an explicit trans side friction term for a quantitative description of the translocation process. (paper)

Availability note (English)

Available from http://dx.doi.org/10.1088/1361-648X/aac796

Additional details

Identifiers

Publishing Information

Journal Title
Journal of Physics. Condensed Matter
Journal Volume
30
Journal Issue
27
Journal Page Range
[13 p.]
ISSN
0953-8984
CODEN
JCOMEL

INIS

Country of Publication
United Kingdom
Country of Input or Organization
International Atomic Energy Agency (IAEA)
INIS RN
52049842
Subject category
S75: CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND SUPERFLUIDITY;
Descriptors DEI
ASYMPTOTIC SOLUTIONS; CORRECTIONS; FRICTION; MOLECULAR DYNAMICS METHOD; MONOMERS; POLYMERS; SIMULATION; TRANSLOCATION
Descriptors DEC
CALCULATION METHODS; MATHEMATICAL SOLUTIONS