Published October 1, 2019 | Version v1
Journal article

Quantum chemical analysis of reaction indices and reaction path for drug molecules

  • 1. RIKEN Center for Biosystems Dynamics Research (BDR), 6-2-4 Furuedai, Suita, Osaka 565-0874 (Japan)

Description

We performed a quantum chemical study on evaluating chemical reactivity for drug molecules in Cytochrome P450 (CYP) metabolic reaction. In this study, we focused on two insights for analysing the chemical reactivity: one is the Fukui reaction indices for a molecule, and the other is the minimum energy paths of hydrogen transition reaction between drug molecule and FeO-Porphyrin ring part on the CYP metabolic reaction. The Fukui indices are obtained numerically by using the familiar population analysis method in quantum chemical calculations. We performed the assessments of some population analyses to clarify the numerical behaviour clearly and then evaluated the potential of the reactivity of drug molecule. On the other hand, in the analysis of the minimum energy path for the CYP metabolic reaction, we performed the nudged elastic band (NEB) calculations for the hydrogen transition reaction in the first step of the CYP metabolic reaction. We report the findings for the reactivity from the Fukui indices method and also show the NEB results for the reaction paths. (paper)

Availability note (English)

Available from http://dx.doi.org/10.1088/1742-6596/1290/1/012021

Additional details

Publishing Information

Journal Title
Journal of Physics. Conference Series (Online)
Journal Volume
1290
Journal Issue
1
Journal Page Range
[9 p.]
ISSN
1742-6596

Conference

Title
30. IUPAP Conference on Computational Physics
Dates
29 Jul - 2 Aug 2018
Place
Davis, CA (United States)

INIS

Country of Publication
United Kingdom
Country of Input or Organization
International Atomic Energy Agency (IAEA)
INIS RN
53043597
Subject category
S37: INORGANIC, ORGANIC, PHYSICAL AND ANALYTICAL CHEMISTRY; S74: ATOMIC AND MOLECULAR PHYSICS;
Resource subtype / Literary indicator
Conference
Descriptors DEI
CHEMICAL ANALYSIS; CYTOCHROMES; DRUGS; HYDROGEN; IRON OXIDES; MOLECULES; PORPHYRINS; REACTIVITY
Descriptors DEC
CARBOXYLIC ACIDS; CHALCOGENIDES; ELEMENTS; HETEROCYCLIC ACIDS; HETEROCYCLIC COMPOUNDS; IRON COMPOUNDS; NONMETALS; ORGANIC ACIDS; ORGANIC COMPOUNDS; ORGANIC NITROGEN COMPOUNDS; OXIDES; OXYGEN COMPOUNDS; PIGMENTS; PROTEINS; TRANSITION ELEMENT COMPOUNDS