Published August 1996 | Version v1
Journal article

Calculation of free-energy differences from computer simulations of initial and final states

  • 1. Theoretical Biology and Biophysics Group T-10, MS K710, and Center for Nonlinear Studies, Los Alamos National Laboratory, Los Alamos, New Mexico 87545 (United States)
  • 2. Laboratory of Chemical Physics, National Institute of Diabetes and Digestive and Kidney Diseases, National Institute of Health, Bethesda, Maryland 20892 (United States)

Description

A class of simple expressions of increasing accuracy for the free-energy difference between two states is derived based on numerical thermodynamic integration. The implementation of these formulas requires simulations of the initial and final (and possibly a few intermediate) states. They involve higher free-energy derivatives at these states which are related to the moments of the probability distribution of the perturbation. Given a specified number of such derivatives, these integration formulas are optimal in the sense that they are exact to the highest possible order of free-energy perturbation theory. The utility of this approach is illustrated for the hydration free energy of water. This problem provides a quite stringent test because the free energy is a highly nonlinear function of the charge so that even fourth order perturbation theory gives a very poor estimate of the free-energy change. Our results should prove most useful for complex, computationally demanding problems where free-energy differences arise primarily from changes in the electrostatic interactions (e.g., electron transfer, charging of ions, protonation of amino acids in proteins). copyright 1996 American Institute of Physics

Additional details

Publishing Information

Journal Title
Journal of Chemical Physics
Journal Volume
105
Journal Issue
5
Journal Page Range
p. 2004-2010.
ISSN
0021-9606
CODEN
JCPSA6

INIS

Country of Publication
United States
Country of Input or Organization
United States
INIS RN
27078670
Subject category
S74: ATOMIC AND MOLECULAR PHYSICS;
Descriptors DEI
CALCULATION METHODS; COMPUTERIZED SIMULATION; FREE ENERGY; HYDRATION; PERTURBATION THEORY; THERMODYNAMICS; WATER
Descriptors DEC
ENERGY; HYDROGEN COMPOUNDS; OXYGEN COMPOUNDS; PHYSICAL PROPERTIES; SIMULATION; SOLVATION; THERMODYNAMIC PROPERTIES