Published April 1, 2016 | Version v1
Journal article

Off-lattice random walks with excluded volume: a new method of generation, proof of ergodicity and numerical results

  • 1. Department of Mathematics and Science, Holy Names University, 3500 Mountain Blvd. Oakland, CA 94619 (United States)
  • 2. Mathematics Department University of California: Santa Barbara, South Hall Santa Barbara, CA 93106 (United States)

Description

We describe a new algorithm, the reflection method, to generate off-lattice random walks of specified, though arbitrarily large, thickness in R 3 and prove that our method is ergodic on the space of thick walks. The data resulting from our implementation of this method is consistent with the scaling of the squared radius of gyration of random walks, with no thickness constraint. Based on this, we use the data to describe the complex relationship between the presence and nature of knotting and size, thickness and shape of the random walk. We extend the current understanding of excluded volume by expanding the range of analysis of how the squared radius of gyration scales with length and thickness. We also examine the profound effect of thickness on knotting in open chains. We will quantify how thickness effects the size of thick open chains, calculating the growth exponent for squared radius of gyration as a function of thickness. We will also show that for radius r 0.4, increasing thickness by 0.1 decreases the probability of knot formation by 50% or more. (paper)

Availability note (English)

Available from http://dx.doi.org/10.1088/1751-8113/49/13/135203

Additional details

Publishing Information

Journal Title
Journal of Physics. A, Mathematical and Theoretical (Online)
Journal Volume
49
Journal Issue
13
Journal Page Range
[28 p.]
ISSN
1751-8121

INIS

Country of Publication
United Kingdom
Country of Input or Organization
International Atomic Energy Agency (IAEA)
INIS RN
51040130
Subject category
S71: CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSICS; S75: CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND SUPERFLUIDITY;
Descriptors DEI
ALGORITHMS; GRAPH THEORY; LENGTH; PROBABILITY; RANDOMNESS; REFLECTION; THICKNESS
Descriptors DEC
DIMENSIONS; MATHEMATICAL LOGIC; MATHEMATICS