Crystallization of porcine pancreatic elastase and a preliminary neutron diffraction experiment
Creators
- 1. Department of Biological Science, Graduate School of Science, Osaka Prefecture University, 1-1 Gakuen-cho, Naka-ku, Sakai, Osaka 599-8531 (Japan)
- 2. Molecular Structural Biology Group, Quantum Beam Science Directorate, Japan Atomic Energy Agency, 2-4 Shirakata-Shirane, Tokai, Ibaraki 319-1195 (Japan)
- 3. Lead Discovery Research Laboratories, Astellas Pharma Inc., 21 Miyukigaoka, Tsukuba-shi, Ibaraki 305-8585 (Japan)
Description
To investigate the structural characteristics of a covalent inhibitor bound to porcine pancreatic elastase (PPE), including H atoms and hydration by water, a crystal of porcine pancreatic elastase with its inhibitor was grown to a size of 1.6 mm3 for neutron diffraction study. The crystal diffracted to 2.3 Å resolution with sufficient quality for further structure determination owing to the similar atomic scattering properties of deuterium and carbon. Porcine pancreatic elastase (PPE) resembles the attractive drug target leukocyte elastase, which has been implicated in a number of inflammatory disorders. In order to investigate the structural characteristics of a covalent inhibitor bound to PPE, including H atoms and the hydration by water, a single crystal of PPE for neutron diffraction study was grown in D2O containing 0.2 M sodium sulfate (pD 5.0) using the sitting-drop vapour-diffusion method. The crystal was grown to a size of 1.6 mm3 by repeated macroseeding. Neutron diffraction data were collected at room temperature using a BIX-3 diffractometer at the JRR-3 research reactor of the Japan Atomic Energy Agency (JAEA). The data set was integrated and scaled to 2.3 Å resolution in space group P212121, with unit-cell parameters a = 51.2, b = 57.8, c = 75.6 Å
Availability note (English)
Available from http://dx.doi.org/10.1107/S1744309107010433; Available from http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2330211Additional details
Identifiers
- URL
- http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2330211;
- DOI
- 10.1107/S1744309107010433;
- PII
- S1744309107010433;
Publishing Information
- Journal Title
- Acta Crystallographica. Section F
- Journal Volume
- 63
- Journal Issue
- Pt 4
- Journal Page Range
- p. 315-317
- ISSN
- 1744-3091
- CODEN
- ACSFCL
INIS
- Country of Publication
- United Kingdom
- Country of Input or Organization
- International Atomic Energy Agency (IAEA)
- INIS RN
- 46065581
- Subject category
- S75: CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND SUPERFLUIDITY;
- Descriptors DEI
- ATOMS; CARBON; CRYSTALLIZATION; DEUTERIUM; DIFFUSION; HYDRATION; MONOCRYSTALS; NEUTRON DIFFRACTION; RESOLUTION; SODIUM SULFATES; SPACE GROUPS
- Descriptors DEC
- ALKALI METAL COMPOUNDS; COHERENT SCATTERING; CRYSTALS; DIFFRACTION; ELEMENTS; HYDROGEN ISOTOPES; ISOTOPES; LIGHT NUCLEI; NONMETALS; NUCLEI; ODD-ODD NUCLEI; OXYGEN COMPOUNDS; PHASE TRANSFORMATIONS; SCATTERING; SODIUM COMPOUNDS; SOLVATION; STABLE ISOTOPES; SULFATES; SULFUR COMPOUNDS; SYMMETRY GROUPS
Optional Information
- Copyright
- Copyright (c) International Union of Crystallography 2007
- Notes
- PMCID: PMC2330211; PMID: 17401204; PUBLISHER-ID: hc5019; OAI: oai:pubmedcentral.nih.gov:2330211