Published September 2021 | Version v1
Journal article

Understanding the interactions between protein stabilizers and the peptide bond through the analysis of the volumetric and compressibility properties for the model systems

  • 1. Department of Physical Chemistry, Faculty of Chemistry, Gdańsk University of Technology, Narutowicza Str. 11/12, 80-233 Gdańsk (Poland)
  • 2. Department of Physical Chemistry, Faculty of Chemistry, University of Łódź, Pomorska Str.165, 90-236 Łódź (Poland)

Description

Highlights: • Interactions in (glycine/betaine)-NMA-water system were studied. • Density and speed of sound were measured at different temperatures. • NMA, model of protein, alters the hydration sphere of solute. • Impact of temperature and NMA concentration on solute–solute interactions is small or moderate. This work confirms our earlier supposition, that volumetric and acoustic parameters for simple model proposed by us are directly related to stabilizing/destabilizing effect of osmolytes on proteins structure. The apparent molar volumes, VΦ, and the apparent molar isentropic compressions, KS, Φ, of glycine and N,N,N –trimethylglycine (betaine) were determined from densities and speed of sound measurements in aqueous solution of N-methylacetamide (as a model of peptide bond of protein). The standard molar parameters for osmolytes were obtained from concentration dependence of the calculated quantities at NMA concentration equal 2, 4, 6 and 8 (mol/kg) and at temperature T = (288.15, 298.15 and 308.15) K. The standard values were combined with volumetric and compressibility data for amino acids in pure water to obtain transfer properties from water to aqueous N-methylacetamide solutions. The standard partial molar volume of transfer of studied osmolytes, ΔtVΦ0, seems to be related mainly to hydrophilic/hydrophobic features of molecules. The stabilizing/destabilizing effect of solute on protein structure is reflected in temperature influence on the limiting partial molar quantities.

Availability note (English)

Available from http://dx.doi.org/10.1016/j.jct.2021.106485

Additional details

Identifiers

DOI
10.1016/j.jct.2021.106485;
PII
S0021961421001002;

Publishing Information

Journal Title
Journal of Chemical Thermodynamics
Journal Volume
160
Journal Page Range
vp.
ISSN
0021-9614
CODEN
JCTDAF

Optional Information

Copyright
Copyright (c) 2021 Elsevier Ltd.