Understanding the interactions between protein stabilizers and the peptide bond through the analysis of the volumetric and compressibility properties for the model systems
Creators
- 1. Department of Physical Chemistry, Faculty of Chemistry, Gdańsk University of Technology, Narutowicza Str. 11/12, 80-233 Gdańsk (Poland)
- 2. Department of Physical Chemistry, Faculty of Chemistry, University of Łódź, Pomorska Str.165, 90-236 Łódź (Poland)
Description
Highlights: • Interactions in (glycine/betaine)-NMA-water system were studied. • Density and speed of sound were measured at different temperatures. • NMA, model of protein, alters the hydration sphere of solute. • Impact of temperature and NMA concentration on solute–solute interactions is small or moderate. This work confirms our earlier supposition, that volumetric and acoustic parameters for simple model proposed by us are directly related to stabilizing/destabilizing effect of osmolytes on proteins structure. The apparent molar volumes, VΦ, and the apparent molar isentropic compressions, KS, Φ, of glycine and N,N,N –trimethylglycine (betaine) were determined from densities and speed of sound measurements in aqueous solution of N-methylacetamide (as a model of peptide bond of protein). The standard molar parameters for osmolytes were obtained from concentration dependence of the calculated quantities at NMA concentration equal 2, 4, 6 and 8 (mol/kg) and at temperature T = (288.15, 298.15 and 308.15) K. The standard values were combined with volumetric and compressibility data for amino acids in pure water to obtain transfer properties from water to aqueous N-methylacetamide solutions. The standard partial molar volume of transfer of studied osmolytes, , seems to be related mainly to hydrophilic/hydrophobic features of molecules. The stabilizing/destabilizing effect of solute on protein structure is reflected in temperature influence on the limiting partial molar quantities.
Availability note (English)
Available from http://dx.doi.org/10.1016/j.jct.2021.106485Additional details
Identifiers
- DOI
- 10.1016/j.jct.2021.106485;
- PII
- S0021961421001002;
Publishing Information
- Journal Title
- Journal of Chemical Thermodynamics
- Journal Volume
- 160
- Journal Page Range
- vp.
- ISSN
- 0021-9614
- CODEN
- JCTDAF
INIS
- Country of Publication
- United Kingdom
- Country of Input or Organization
- International Atomic Energy Agency (IAEA)
- INIS RN
- 54071093
- Subject category
- S37: INORGANIC, ORGANIC, PHYSICAL AND ANALYTICAL CHEMISTRY;
- Descriptors DEI
- ACOUSTICS; APPARENT MOLAL VOLUME; AQUEOUS SOLUTIONS; BETAINE; GLYCINE; ISENTROPIC PROCESSES; MOLECULES; PARTIAL MOLAL VOLUME; PEPTIDES; PROTEIN STRUCTURE; SOLUTES; SOUND WAVES
- Descriptors DEC
- AMINO ACIDS; AMMONIUM COMPOUNDS; CARBOXYLIC ACIDS; DISPERSIONS; DRUGS; HOMOGENEOUS MIXTURES; LIPOTROPIC FACTORS; MIXTURES; ORGANIC ACIDS; ORGANIC COMPOUNDS; PROTEINS; QUATERNARY AMMONIUM COMPOUNDS; SOLUTIONS
Optional Information
- Copyright
- Copyright (c) 2021 Elsevier Ltd.