Published March 29, 2013 | Version v1
Journal article

Upper bounds on the minimum length of cubic lattice knots

  • 1. Department of Mathematics, Korea University, Anam-dong, Sungbuk-ku, Seoul 136-701 (Korea, Republic of)

Description

Knots have been considered to be useful models for simulating molecular chains such as DNA and proteins. One quantity that we are interested in is the molecular knot and the minimum number of monomers necessary to realize a knot. In this paper, we consider every knot in the cubic lattice. In particular, the minimum length of a knot indicates the minimum length necessary to construct the knot in the cubic lattice. Diao introduced this term (he used 'minimum edge number' instead) and proved that the minimum length of the trefoil knot 31 is 24. Also the minimum lengths of the knots 41 and 51 are known to be 30 and 34, respectively. In this paper we find a general upper bound of the minimum length of a nontrivial knot K, except the trefoil knot, in terms of the minimum crossing number c(K). The upper bound is 3/2 c(K)2 + 2c(K) + 1/2 . Moreover, if K is a non-alternating prime knot, then the upper bound is 3/2 c(K)2 - 4c(K) + 5/2 . Our work can be considered a direct consequence of the results obtained by the authors in Hong et al (2012 arXiv:1209.0048). Furthermore, if K is (n + 1, n)-torus knot, then the upper bound is 6 c(K) + 2√(c(K)+1)+6. (paper)

Availability note (English)

Available from http://dx.doi.org/10.1088/1751-8113/46/12/125001

Additional details

Publishing Information

Journal Title
Journal of Physics. A, Mathematical and Theoretical (Online)
Journal Volume
46
Journal Issue
12
Journal Page Range
[7 p.]
ISSN
1751-8121

INIS

Country of Publication
United Kingdom
Country of Input or Organization
International Atomic Energy Agency (IAEA)
INIS RN
44094297
Subject category
S60: APPLIED LIFE SCIENCES;
Descriptors DEI
CHAINS; CUBIC LATTICES; DNA; MONOMERS; PROTEINS
Descriptors DEC
CRYSTAL LATTICES; CRYSTAL STRUCTURE; NUCLEIC ACIDS; ORGANIC COMPOUNDS