A massively-parallel electronic-structure calculations based on real-space density functional theory
Creators
- 1. Center for Computational Sciences, University of Tsukuba, 1-1-1 Tenoudai, Tsukuba, Ibaraki 305-8577 (Japan)
- 2. Department of Applied Physics, School of Engineering, University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-8656 (Japan)
Description
Based on the real-space finite-difference method, we have developed a first-principles density functional program that efficiently performs large-scale calculations on massively-parallel computers. In addition to efficient parallel implementation, we also implemented several computational improvements, substantially reducing the computational costs of O(N3) operations such as the Gram-Schmidt procedure and subspace diagonalization. Using the program on a massively-parallel computer cluster with a theoretical peak performance of several TFLOPS, we perform electronic-structure calculations for a system consisting of over 10,000 Si atoms, and obtain a self-consistent electronic-structure in a few hundred hours. We analyze in detail the costs of the program in terms of computation and of inter-node communications to clarify the efficiency, the applicability, and the possibility for further improvements.
Availability note (English)
Available from http://dx.doi.org/10.1016/j.jcp.2009.11.038Additional details
Identifiers
- DOI
- 10.1016/j.jcp.2009.11.038;
- PII
- S0021-9991(09)00667-6;
Publishing Information
- Journal Title
- Journal of Computational Physics
- Journal Volume
- 229
- Journal Issue
- 6
- Journal Page Range
- p. 2339-2363
- ISSN
- 0021-9991
- CODEN
- JCTPAH
INIS
- Country of Publication
- United States
- Country of Input or Organization
- International Atomic Energy Agency (IAEA)
- INIS RN
- 41069807
- Subject category
- S75: CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND SUPERFLUIDITY; S71: CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSICS;
- Descriptors DEI
- COMMUNICATIONS; DENSITY FUNCTIONAL METHOD; ELECTRONIC STRUCTURE; FINITE DIFFERENCE METHOD; PERFORMANCE
- Descriptors DEC
- CALCULATION METHODS; ITERATIVE METHODS; MATHEMATICAL SOLUTIONS; NUMERICAL SOLUTION; VARIATIONAL METHODS
Optional Information
- Copyright
- Copyright (c) 2009 Elsevier Science B.V., Amsterdam, The Netherlands, All rights reserved.