Published March 20, 2010 | Version v1
Journal article

A massively-parallel electronic-structure calculations based on real-space density functional theory

  • 1. Center for Computational Sciences, University of Tsukuba, 1-1-1 Tenoudai, Tsukuba, Ibaraki 305-8577 (Japan)
  • 2. Department of Applied Physics, School of Engineering, University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-8656 (Japan)

Description

Based on the real-space finite-difference method, we have developed a first-principles density functional program that efficiently performs large-scale calculations on massively-parallel computers. In addition to efficient parallel implementation, we also implemented several computational improvements, substantially reducing the computational costs of O(N3) operations such as the Gram-Schmidt procedure and subspace diagonalization. Using the program on a massively-parallel computer cluster with a theoretical peak performance of several TFLOPS, we perform electronic-structure calculations for a system consisting of over 10,000 Si atoms, and obtain a self-consistent electronic-structure in a few hundred hours. We analyze in detail the costs of the program in terms of computation and of inter-node communications to clarify the efficiency, the applicability, and the possibility for further improvements.

Availability note (English)

Available from http://dx.doi.org/10.1016/j.jcp.2009.11.038

Additional details

Identifiers

DOI
10.1016/j.jcp.2009.11.038;
PII
S0021-9991(09)00667-6;

Publishing Information

Journal Title
Journal of Computational Physics
Journal Volume
229
Journal Issue
6
Journal Page Range
p. 2339-2363
ISSN
0021-9991
CODEN
JCTPAH

Optional Information

Copyright
Copyright (c) 2009 Elsevier Science B.V., Amsterdam, The Netherlands, All rights reserved.