Published October 30, 2009
| Version v1
Journal article
And did he search for you, and could not find you?
- 1. Physics Department, Technical University of Munich, James Franck Strasse, 85747 Garching (Germany)
- 2. School of Chemistry, Tel Aviv University, Tel Aviv 69978 (Israel)
- 3. Department of Physics and Astronomy, Faculty of Sciences, VU University, De Boelelaan 1081, 1081 HV Amsterdam (Netherlands)
- 4. MEMPHYS-Center for Biomembrane Physics, Department of Physics and Chemistry, University of Southern Denmark, Campusvej 55, 5230 Odense M (Denmark)
Description
We discuss stochastic search mechanisms for sparse targets. These mechanisms may be normal diffusion in different dimensionalities as well as anomalous diffusion, namely, Levy walks and subdiffusion. We argue that under different boundary conditions either mechanism may be beneficial for the search. As a concrete example we investigate facilitated diffusion of regulating proteins in gene regulation. Moreover we discuss potential pitfalls in acquiring diffusion behaviour from time series analysis of single particle trajectories.
Availability note (English)
Available from http://dx.doi.org/10.1088/1751-8113/42/43/434005Additional details
Identifiers
- DOI
- 10.1088/1751-8113/42/43/434005;
- PII
- S1751-8113(09)15632-9;
Publishing Information
- Journal Title
- Journal of Physics. A, Mathematical and Theoretical (Online)
- Journal Volume
- 42
- Journal Issue
- 43
- Journal Page Range
- [18 p.]
- ISSN
- 1751-8121
INIS
- Country of Publication
- United Kingdom
- Country of Input or Organization
- International Atomic Energy Agency (IAEA)
- INIS RN
- 41054197
- Subject category
- S97: MATHEMATICAL METHODS AND COMPUTING;
- Descriptors DEI
- BEHAVIOR; BOUNDARY CONDITIONS; DIFFUSION; GENE REGULATION; PROTEINS; STOCHASTIC PROCESSES; TIME-SERIES ANALYSIS
- Descriptors DEC
- MATHEMATICS; ORGANIC COMPOUNDS; STATISTICS