Published October 30, 2009 | Version v1
Journal article

And did he search for you, and could not find you?

  • 1. Physics Department, Technical University of Munich, James Franck Strasse, 85747 Garching (Germany)
  • 2. School of Chemistry, Tel Aviv University, Tel Aviv 69978 (Israel)
  • 3. Department of Physics and Astronomy, Faculty of Sciences, VU University, De Boelelaan 1081, 1081 HV Amsterdam (Netherlands)
  • 4. MEMPHYS-Center for Biomembrane Physics, Department of Physics and Chemistry, University of Southern Denmark, Campusvej 55, 5230 Odense M (Denmark)

Description

We discuss stochastic search mechanisms for sparse targets. These mechanisms may be normal diffusion in different dimensionalities as well as anomalous diffusion, namely, Levy walks and subdiffusion. We argue that under different boundary conditions either mechanism may be beneficial for the search. As a concrete example we investigate facilitated diffusion of regulating proteins in gene regulation. Moreover we discuss potential pitfalls in acquiring diffusion behaviour from time series analysis of single particle trajectories.

Availability note (English)

Available from http://dx.doi.org/10.1088/1751-8113/42/43/434005

Additional details

Identifiers

DOI
10.1088/1751-8113/42/43/434005;
PII
S1751-8113(09)15632-9;

Publishing Information

Journal Title
Journal of Physics. A, Mathematical and Theoretical (Online)
Journal Volume
42
Journal Issue
43
Journal Page Range
[18 p.]
ISSN
1751-8121

INIS

Country of Publication
United Kingdom
Country of Input or Organization
International Atomic Energy Agency (IAEA)
INIS RN
41054197
Subject category
S97: MATHEMATICAL METHODS AND COMPUTING;
Descriptors DEI
BEHAVIOR; BOUNDARY CONDITIONS; DIFFUSION; GENE REGULATION; PROTEINS; STOCHASTIC PROCESSES; TIME-SERIES ANALYSIS
Descriptors DEC
MATHEMATICS; ORGANIC COMPOUNDS; STATISTICS