Published 2013 | Version v1
Journal article

Conformational propensities of intrinsically disordered proteins from NMR chemical shifts

  • 1. Protein Dynamics and Flexibility Institut de Biologie Structurale, DSV, CEA-CNRS-UJF UMR 5075 41, rue Jules Horowitz 38027 Grenoble (France)

Description

The realization that a protein can be fully functional even in the absence of a stable three-dimensional structure has motivated a large number of studies describing the conformational behaviour of these proteins at atomic resolution. Here, we review recent advances in the determination of local structural propensities of intrinsically disordered proteins (IDPs) from experimental NMR chemical shifts. A mapping of the local structure in IDPs is of paramount importance in order to understand the molecular details of complex formation, in particular, for IDPs that fold upon binding or undergo structural transitions to pathological forms of the same protein. We discuss experimental strategies for the spectral assignment of IDPs, chemical shift prediction algorithms and the generation of representative structural ensembles of IDPs on the basis of chemical shifts. Additionally, we highlight the inherent degeneracies associated with the determination of IDP sub-state populations from NMR chemical shifts alone. (authors)

Availability note (English)

Available from doi: http://dx.doi.org/10.1002/cphc.201300387

Additional details

Identifiers

Publishing Information

Journal Title
ChemPhysChem (Print)
Journal Volume
14
Journal Page Range
p. 3034-3045
ISSN
1439-4235

INIS

Country of Publication
Germany
Country of Input or Organization
France
INIS RN
47018390
Subject category
S60: APPLIED LIFE SCIENCES;
Descriptors DEI
ALGORITHMS; CHEMICAL SHIFT; EXCITATION; NUCLEAR MAGNETIC RESONANCE; PROTEINS; RELAXATION
Descriptors DEC
ENERGY-LEVEL TRANSITIONS; MAGNETIC RESONANCE; MATHEMATICAL LOGIC; ORGANIC COMPOUNDS; RESONANCE

Optional Information

Notes
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