Published January 2016 | Version v1
Journal article

Solvent effects on excited-state electron-transfer rate of pyrene-labeled deoxyuridine: A theoretical study

  • 1. R&D Center, Mitsui Chemicals, Inc., 580-32 Nagaura, Sodegaura, Chiba 299-0265 (Japan)
  • 2. Center for Computational Sciences, University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki 305-8577 (Japan)
  • 3. RIKEN, Advanced Institute for Computational Science, 7-1-26, Minatojima-minami, Chuo-ku, Kobe 650-0047 (Japan)
  • 4. Graduate School of Pure and Applied Sciences, University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki 305-8577 (Japan)

Description

Highlights: Explicit solvent effects on the excited-state electron-transfer rate constants are presented. Difference between protic and aprotic solvents are shown in detail. Hydrogen bond between solvent and solute causes enhancement of excited-state electron-transfer rate. Combined density functional and classical molecular dynamics simulation results are demonstrated. Excited-state electron-transfer rates are evaluated on the basis of a Marcus theory. Solvent effects on the quenching process from the first excited state of 5-(1-pyrenyl)-2⿲-deoxyuridine (Py-dU) were theoretically examined. Our results suggest that the excited-state electron transfer occurs without the so-called proton-coupled electron transfer process, which supports experimental results. Although there are no remarkable differences observed in the structure and the corresponding S1 excitation energy between the solutions of MeOH and MeCN within a polarizable continuum model, we report here that hydrogen bonds between the explicit MeOH molecule with the dU moiety, whose structure was frequently found in molecular dynamics simulations, result in an enhancement of the electron-transfer rate constant.

Availability note (English)

Available from http://dx.doi.org/10.1016/j.cplett.2015.11.037

Additional details

Identifiers

DOI
10.1016/j.cplett.2015.11.037;
PII
S000926141500888X;

Publishing Information

Journal Title
Chemical Physics Letters
Journal Volume
644
Journal Page Range
p. 25-30
ISSN
0009-2614
CODEN
CHPLBC

INIS

Country of Publication
Netherlands
Country of Input or Organization
International Atomic Energy Agency (IAEA)
INIS RN
51123576
Subject category
S74: ATOMIC AND MOLECULAR PHYSICS;
Descriptors DEI
DENSITY FUNCTIONAL METHOD; ELECTRON TRANSFER; EXCITED STATES; MOLECULAR DYNAMICS METHOD; REACTION KINETICS; SIMULATION; SOLVENTS
Descriptors DEC
CALCULATION METHODS; ENERGY LEVELS; KINETICS; VARIATIONAL METHODS

Optional Information

Copyright
Copyright (c) 2015 Elsevier B.V. All rights reserved.