SciPhon: a data analysis software for nuclear resonant inelastic X-ray scattering with applications to Fe, Kr, Sn, Eu and Dy
Creators
- 1. The University of Chicago, 5734 South Ellis Avenue, Chicago, IL 60615 (United States)
- 2. Argonne National Laboratory, 9700 South Cass Avenue, Argonne, IL 60439 (United States)
- 3. Northwestern University, 2145 Sheridan Road, Evanston, IL 60208 (United States)
- 4. Sorbonne Universités, UPMC, IRD, MNHN, Muséum National d'Histoire Naturelle, 61 Rue Buffon, 75005 Paris (France)
- 5. Stanford University, Stanford, CA (United States)
- 6. University of Texas at Austin, Austin, TX 78712 (United States)
Description
SciPhon is a software for the reduction of nuclear resonant inelastic X-ray scattering data. Tests and examples of applications to Fe, Kr, Sn, Eu and Dy data are presented. The synchrotron radiation technique of nuclear resonant inelastic X-ray scattering (NRIXS), also known as nuclear resonance vibrational spectroscopy or nuclear inelastic scattering, provides a wealth of information on the vibrational properties of solids. It has found applications in studies of lattice dynamics and elasticity, superconductivity, heme biochemistry, seismology, isotope geochemistry and many other fields. It involves probing the vibrational modes of solids by using the nuclear resonance of Mössbauer isotopes such as 57Fe, 83Kr, 119Sn, 151Eu and 161Dy. After data reduction, it provides the partial phonon density of states of the Mössbauer isotope that is investigated, as well as many other derived quantities such as the mean force constant of the chemical bonds and the Debye velocity. The data reduction is, however, not straightforward and involves removal of the elastic peak, normalization and Fourier–Log transformation. Furthermore, some of the quantities derived are highly sensitive to details in the baseline correction. A software package and several novel procedures to streamline and hopefully improve the reduction of the NRIXS data generated at sector 3ID of the Advanced Photon Source have been developed. The graphical user interface software is named SciPhon and runs as a Mathematica package. It is easily portable to other platforms and can be easily adapted for reducing data generated at other beamlines. Several tests and comparisons are presented that demonstrate the usefulness of this software, whose results have already been used in several publications. Here, the SciPhon software is used to reduce Kr, Sn, Eu and Dy NRIXS data, and potential implications for interpreting natural isotopic variations in those systems are discussed.
Availability note (English)
Available from http://dx.doi.org/10.1107/S1600577518009487; Available from http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6140397Additional details
Identifiers
- DOI
- 10.1107/S1600577518009487;
- PII
- S1600577518009487;
Publishing Information
- Journal Title
- Journal of Synchrotron Radiation
- Journal Volume
- 25
- Journal Issue
- Pt 5
- Journal Page Range
- p. 1581-1599
- ISSN
- 0909-0495
- CODEN
- JSYRES
INIS
- Country of Publication
- Denmark
- Country of Input or Organization
- International Atomic Energy Agency (IAEA)
- INIS RN
- 49086885
- Subject category
- S46: INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND TECHNOLOGY;
- Descriptors DEI
- ADVANCED PHOTON SOURCE; CHEMICAL BONDS; COMPUTER CODES; DATA ANALYSIS; DYSPROSIUM 161; EUROPIUM 151; FOURIER TRANSFORMATION; GRAPHICAL USER INTERFACE; INELASTIC SCATTERING; REDUCTION; RESONANCE; SYNCHROTRON RADIATION; TIN 119; X-RAY DIFFRACTION
- Descriptors DEC
- BREMSSTRAHLUNG; CHEMICAL REACTIONS; COHERENT SCATTERING; DATA PROCESSING; DAYS LIVING RADIOISOTOPES; DIFFRACTION; DYSPROSIUM ISOTOPES; ELECTROMAGNETIC RADIATION; EUROPIUM ISOTOPES; EVEN-ODD NUCLEI; INTEGRAL TRANSFORMATIONS; INTERMEDIATE MASS NUCLEI; INTERNAL CONVERSION RADIOISOTOPES; ISOMERIC TRANSITION ISOTOPES; ISOTOPES; NUCLEI; ODD-EVEN NUCLEI; PROCESSING; RADIATION SOURCES; RADIATIONS; RADIOISOTOPES; RARE EARTH NUCLEI; SCATTERING; STABLE ISOTOPES; STORAGE RINGS; SYNCHROTRON RADIATION SOURCES; TIN ISOTOPES; TRANSFORMATIONS
Optional Information
- Copyright
- Copyright (c) Nicolas Dauphas et al. 2018
- Notes
- PMCID: PMC6140397; PMID: 30179200; PMID: 30179200; PUBLISHER-ID: fv5085; OAI: oai:pubmedcentral.nih.gov:6140397; This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.