Published August 21, 2018 | Version v1
Journal article

SciPhon: a data analysis software for nuclear resonant inelastic X-ray scattering with applications to Fe, Kr, Sn, Eu and Dy

  • 1. The University of Chicago, 5734 South Ellis Avenue, Chicago, IL 60615 (United States)
  • 2. Argonne National Laboratory, 9700 South Cass Avenue, Argonne, IL 60439 (United States)
  • 3. Northwestern University, 2145 Sheridan Road, Evanston, IL 60208 (United States)
  • 4. Sorbonne Universités, UPMC, IRD, MNHN, Muséum National d'Histoire Naturelle, 61 Rue Buffon, 75005 Paris (France)
  • 5. Stanford University, Stanford, CA (United States)
  • 6. University of Texas at Austin, Austin, TX 78712 (United States)

Description

SciPhon is a software for the reduction of nuclear resonant inelastic X-ray scattering data. Tests and examples of applications to Fe, Kr, Sn, Eu and Dy data are presented. The synchrotron radiation technique of nuclear resonant inelastic X-ray scattering (NRIXS), also known as nuclear resonance vibrational spectroscopy or nuclear inelastic scattering, provides a wealth of information on the vibrational properties of solids. It has found applications in studies of lattice dynamics and elasticity, superconductivity, heme biochemistry, seismology, isotope geochemistry and many other fields. It involves probing the vibrational modes of solids by using the nuclear resonance of Mössbauer isotopes such as 57Fe, 83Kr, 119Sn, 151Eu and 161Dy. After data reduction, it provides the partial phonon density of states of the Mössbauer isotope that is investigated, as well as many other derived quantities such as the mean force constant of the chemical bonds and the Debye velocity. The data reduction is, however, not straightforward and involves removal of the elastic peak, normalization and Fourier–Log transformation. Furthermore, some of the quantities derived are highly sensitive to details in the baseline correction. A software package and several novel procedures to streamline and hopefully improve the reduction of the NRIXS data generated at sector 3ID of the Advanced Photon Source have been developed. The graphical user interface software is named SciPhon and runs as a Mathematica package. It is easily portable to other platforms and can be easily adapted for reducing data generated at other beamlines. Several tests and comparisons are presented that demonstrate the usefulness of this software, whose results have already been used in several publications. Here, the SciPhon software is used to reduce Kr, Sn, Eu and Dy NRIXS data, and potential implications for interpreting natural isotopic variations in those systems are discussed.

Availability note (English)

Available from http://dx.doi.org/10.1107/S1600577518009487; Available from http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6140397

Additional details

Identifiers

DOI
10.1107/S1600577518009487;
PII
S1600577518009487;

Publishing Information

Journal Title
Journal of Synchrotron Radiation
Journal Volume
25
Journal Issue
Pt 5
Journal Page Range
p. 1581-1599
ISSN
0909-0495
CODEN
JSYRES

Optional Information

Copyright
Copyright (c) Nicolas Dauphas et al. 2018
Notes
PMCID: PMC6140397; PMID: 30179200; PMID: 30179200; PUBLISHER-ID: fv5085; OAI: oai:pubmedcentral.nih.gov:6140397; This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.