Published September 2006 | Version v1
Journal article

Processing of ND NMR spectra sampled in polar coordinates: a simple Fourier transform instead of a reconstruction

  • 1. Institut de Biologie Structurale 'Jean-Pierre Ebel', CNRS-CEA-UJF (France)

Description

In order to reduce the acquisition time of multidimensional NMR spectra of biological macromolecules, projected spectra (or in other words, spectra sampled in polar coordinates) can be used. Their standard processing involves a regular FFT of the projections followed by a reconstruction, i.e. a non-linear process. In this communication, we show that a 2D discrete Fourier transform can be implemented in polar coordinates to obtain directly a frequency domain spectrum. Aliasing due to local violations of the Nyquist sampling theorem gives rise to base line ridges but the peak line-shapes are not distorted as in most reconstruction methods. The sampling scheme is not linear and the data points in the time domain should thus be weighted accordingly in the polar FT; however, artifacts can be reduced by additional data weighting of the undersampled regions. This processing does not require any parameter tuning and is straightforward to use. The algorithm written for polar sampling can be adapted to any sampling scheme and will permit to investigate better compromises in terms of experimental time and lack of artifacts

Additional details

Identifiers

Publishing Information

Journal Title
Journal of Biomolecular NMR
Journal Volume
36
Journal Issue
1
Journal Page Range
p. 45-54
ISSN
0925-2738

INIS

Country of Publication
Netherlands
Country of Input or Organization
International Atomic Energy Agency (IAEA)
INIS RN
39115679
Subject category
S60: APPLIED LIFE SCIENCES;
Descriptors DEI
ALGORITHMS; FOURIER TRANSFORMATION; NMR SPECTRA; PROTEIN STRUCTURE; SAMPLING
Descriptors DEC
INTEGRAL TRANSFORMATIONS; MATHEMATICAL LOGIC; SPECTRA; TRANSFORMATIONS

Optional Information

Copyright
Copyright (c) 2006 Springer Science+Business Media B.V.