Characterizing the nonmonotonic behavior of mutual information along biochemical reaction cascades
- 1. Department of Physics, University of Toronto, 60 St. George Street, Ontario M5S 1A7, Canada
- 2. Department of Chemical & Physical Sciences, University of Toronto, Mississauga, Ontario L5L 1C6, Canada
- 3. Department of Cell & Systems Biology, University of Toronto, 25 Harbord Street, Toronto, Ontario M5S 3G5, Canada
- 4. Department of Mathematics, University of Toronto, 40 St. George Street, Toronto, Ontario M5S 2E4, Canada
Description
Cells sense environmental signals and transmit information intracellularly through changes in the abundance of molecular components. Such molecular abundances can be measured in single cells and exhibit significant heterogeneity in clonal populations even in identical environments. Experimentally observed joint probability distributions can then be used to quantify the covariability and mutual information between molecular abundances along signaling cascades. However, because stationary state abundances along stochastic biochemical reaction cascades are not conditionally independent, their mutual information is not constrained by the data-processing inequality. Here, we report the conditions under which the mutual information between stationary state abundances increases along a cascade of biochemical reactions. This nonmonotonic behavior can be intuitively understood in terms of noise propagation and time-averaging stochastic fluctuations that are short-lived compared to an extrinsic signal. Our results reemphasize that mutual information measurements of stationary state distributions of cellular components may be of limited utility for characterizing cellular signaling processes because they do not measure information transfer.
Additional details
Identifiers
- DOI
- 10.1103/PhysRevE.110.034309;
- arXiv
- arXiv:2309.10162;
- Crossref Funder ID
- 10.13039/501100000038; 10.13039/501100000038;
Publishing Information
- Journal Title
- Physical Review E
- Journal Volume
- 110
- Journal Issue
- 3
- Journal Page Range
- 11 pgs.
- ISSN
- 1089-3787
INIS
- Country of Publication
- United States
- Country of Input or Organization
- International Atomic Energy Agency (IAEA)
- Subject category
- S71: CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSICS; S97: MATHEMATICAL METHODS AND COMPUTING;
- Descriptors DEI
- ABUNDANCE; COMPARATIVE EVALUATIONS; DATA PROCESSING; DISTRIBUTION; DYNAMICAL SYSTEMS; FLUCTUATIONS; INFORMATION; MOLECULAR STRUCTURE; NETWORK ANALYSIS; NOISE; PROBABILITY; SIGNALS; STATISTICAL MECHANICS; STIMULI; STOCHASTIC PROCESSES
- Descriptors DEC
- EVALUATION; MECHANICS; PROCESSING; VARIATIONS
Optional Information
- Copyright
- ©2024 American Physical Society
- Notes
- Contact Email: Contact author: andreas.hilfinger@utoronto.ca; Record automatically processed
- Funding organization
- Natural Sciences and Engineering Research Council of Canada; Natural Sciences and Engineering Research Council of Canada