Published September 10, 2024 | Version v1
Journal article

Characterizing the nonmonotonic behavior of mutual information along biochemical reaction cascades

  • 1. Department of Physics, University of Toronto, 60 St. George Street, Ontario M5S 1A7, Canada
  • 2. Department of Chemical & Physical Sciences, University of Toronto, Mississauga, Ontario L5L 1C6, Canada
  • 3. Department of Cell & Systems Biology, University of Toronto, 25 Harbord Street, Toronto, Ontario M5S 3G5, Canada
  • 4. Department of Mathematics, University of Toronto, 40 St. George Street, Toronto, Ontario M5S 2E4, Canada

Description

Cells sense environmental signals and transmit information intracellularly through changes in the abundance of molecular components. Such molecular abundances can be measured in single cells and exhibit significant heterogeneity in clonal populations even in identical environments. Experimentally observed joint probability distributions can then be used to quantify the covariability and mutual information between molecular abundances along signaling cascades. However, because stationary state abundances along stochastic biochemical reaction cascades are not conditionally independent, their mutual information is not constrained by the data-processing inequality. Here, we report the conditions under which the mutual information between stationary state abundances increases along a cascade of biochemical reactions. This nonmonotonic behavior can be intuitively understood in terms of noise propagation and time-averaging stochastic fluctuations that are short-lived compared to an extrinsic signal. Our results reemphasize that mutual information measurements of stationary state distributions of cellular components may be of limited utility for characterizing cellular signaling processes because they do not measure information transfer.

Additional details

Identifiers

DOI
10.1103/PhysRevE.110.034309;
arXiv
arXiv:2309.10162;
Crossref Funder ID
10.13039/501100000038; 10.13039/501100000038;

Publishing Information

Journal Title
Physical Review E
Journal Volume
110
Journal Issue
3
Journal Page Range
11 pgs.
ISSN
1089-3787

Optional Information

Copyright
©2024 American Physical Society
Notes
Contact Email: Contact author: andreas.hilfinger@utoronto.ca; Record automatically processed
Funding organization
Natural Sciences and Engineering Research Council of Canada; Natural Sciences and Engineering Research Council of Canada