Published February 28, 2014 | Version v1
Journal article

Ab initio investigation of the first hydration shell of protonated glycine

  • 1. Institute of Photo-Biophysics, Physics and Electronics Department, Henan University, 475004 Kaifeng (China)

Description

The first hydration shell of the protonated glycine is built up using Monte Carlo multiple minimum conformational search analysis with the MMFFs force field. The potential energy surfaces of the protonated glycine and its hydration complexes with up to eight water molecules have been scanned and the energy-minimized structures are predicted using the ab initio calculations. First, three favorable structures of protonated glycine were determined, and the micro-hydration processes showed that water can significantly stabilize the unstable conformers, and then their first hydration shells were established. Finally, we found that seven water molecules are required to fully hydrate the first hydration shell for the most stable conformer of protonated glycine. In order to analyse the hydration process, the dominant hydration sites located around the ammonium and carboxyl groups are studied carefully and systemically. The results indicate that, water molecules hydrate the protonated glycine in an alternative dynamic hydration process which is driven by the competition between different hydration sites. The first three water molecules are strongly attached by the ammonium group, while only the fourth water molecule is attached by the carboxyl group in the ultimate first hydration shell of the protonated glycine. In addition, the first hydration shell model has predicted most identical structures and a reasonable accord in hydration energy and vibrational frequencies of the most stable conformer with the conductor-like polarizable continuum model

Additional details

Identifiers

Publishing Information

Journal Title
Journal of Chemical Physics
Journal Volume
140
Journal Issue
8
Journal Page Range
p. 085103-085103.10
ISSN
0021-9606
CODEN
JCPSA6

INIS

Country of Publication
United States
Country of Input or Organization
International Atomic Energy Agency (IAEA)
INIS RN
45076239
Subject category
S37: INORGANIC, ORGANIC, PHYSICAL AND ANALYTICAL CHEMISTRY;
Descriptors DEI
GLYCINE; HYDRATES; HYDRATION; MOLECULES; MONTE CARLO METHOD; POTENTIAL ENERGY; SHELL MODELS; WATER
Descriptors DEC
AMINO ACIDS; CALCULATION METHODS; CARBOXYLIC ACIDS; ENERGY; HYDROGEN COMPOUNDS; MATHEMATICAL MODELS; NUCLEAR MODELS; ORGANIC ACIDS; ORGANIC COMPOUNDS; OXYGEN COMPOUNDS; SOLVATION

Optional Information

Notes
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