Ab initio investigation of the first hydration shell of protonated glycine
- 1. Institute of Photo-Biophysics, Physics and Electronics Department, Henan University, 475004 Kaifeng (China)
Description
The first hydration shell of the protonated glycine is built up using Monte Carlo multiple minimum conformational search analysis with the MMFFs force field. The potential energy surfaces of the protonated glycine and its hydration complexes with up to eight water molecules have been scanned and the energy-minimized structures are predicted using the ab initio calculations. First, three favorable structures of protonated glycine were determined, and the micro-hydration processes showed that water can significantly stabilize the unstable conformers, and then their first hydration shells were established. Finally, we found that seven water molecules are required to fully hydrate the first hydration shell for the most stable conformer of protonated glycine. In order to analyse the hydration process, the dominant hydration sites located around the ammonium and carboxyl groups are studied carefully and systemically. The results indicate that, water molecules hydrate the protonated glycine in an alternative dynamic hydration process which is driven by the competition between different hydration sites. The first three water molecules are strongly attached by the ammonium group, while only the fourth water molecule is attached by the carboxyl group in the ultimate first hydration shell of the protonated glycine. In addition, the first hydration shell model has predicted most identical structures and a reasonable accord in hydration energy and vibrational frequencies of the most stable conformer with the conductor-like polarizable continuum model
Additional details
Identifiers
- DOI
- 10.1063/1.4862985;
Publishing Information
- Journal Title
- Journal of Chemical Physics
- Journal Volume
- 140
- Journal Issue
- 8
- Journal Page Range
- p. 085103-085103.10
- ISSN
- 0021-9606
- CODEN
- JCPSA6
INIS
- Country of Publication
- United States
- Country of Input or Organization
- International Atomic Energy Agency (IAEA)
- INIS RN
- 45076239
- Subject category
- S37: INORGANIC, ORGANIC, PHYSICAL AND ANALYTICAL CHEMISTRY;
- Descriptors DEI
- GLYCINE; HYDRATES; HYDRATION; MOLECULES; MONTE CARLO METHOD; POTENTIAL ENERGY; SHELL MODELS; WATER
- Descriptors DEC
- AMINO ACIDS; CALCULATION METHODS; CARBOXYLIC ACIDS; ENERGY; HYDROGEN COMPOUNDS; MATHEMATICAL MODELS; NUCLEAR MODELS; ORGANIC ACIDS; ORGANIC COMPOUNDS; OXYGEN COMPOUNDS; SOLVATION
Optional Information
- Notes
- (c) 2014 AIP Publishing LLC