Published August 2013 | Version v1
Journal article

Ligand binding in a spherical region randomly crowded by receptors

  • 1. Semenov Institute of Chemical Physics RAS, 4 Kosygina St, 117977 Moscow (Russian Federation)
  • 2. LE STUDIUM, Loire Valley Institute for Advanced Studies, 3D avenue de la Recherche scientifique, F-45071 Orleans Cedex 2 (France)
  • 3. Centre de biophysique moleculaire CBM-CNRS UPR 4301 du CNRS, rue Charles Sadron, F-45071 Orleans Cedex 2 (France)

Description

This paper reports on some results concerning the binding of diffusing ligands in a spherical 3D region randomly filled by free receptors. It is shown that commonly accepted mean-field theory which is successfully used for bulk diffusion-controlled reactions cannot describe the behavior of ligand concentration in the diffusion layer close to the region boundary. To eliminate this drawback of the theory, we introduce a new complementary diffusion equation in the boundary layer with an appropriate matching condition. Using this equation, we find the characteristic ligand penetration length and total time-dependent flux of ligand binding to free receptors randomly distributed in a spherical region. (paper)

Availability note (English)

Available from http://dx.doi.org/10.1088/1478-3975/10/4/045009

Additional details

Publishing Information

Journal Title
Physical Biology (Online)
Journal Volume
10
Journal Issue
4
Journal Page Range
[7 p.]
ISSN
1478-3975

INIS

Country of Publication
United Kingdom
Country of Input or Organization
International Atomic Energy Agency (IAEA)
INIS RN
44126335
Subject category
S60: APPLIED LIFE SCIENCES;
Descriptors DEI
BOUNDARY LAYERS; CONCENTRATION RATIO; DIFFUSION; DIFFUSION EQUATIONS; LIGANDS; PENETRATION DEPTH; RANDOMNESS; RECEPTORS; TIME DEPENDENCE
Descriptors DEC
DIFFERENTIAL EQUATIONS; DIMENSIONLESS NUMBERS; EQUATIONS; LAYERS; MEMBRANE PROTEINS; ORGANIC COMPOUNDS; PARTIAL DIFFERENTIAL EQUATIONS; PROTEINS