Published August 2013
| Version v1
Journal article
Ligand binding in a spherical region randomly crowded by receptors
Creators
- 1. Semenov Institute of Chemical Physics RAS, 4 Kosygina St, 117977 Moscow (Russian Federation)
- 2. LE STUDIUM, Loire Valley Institute for Advanced Studies, 3D avenue de la Recherche scientifique, F-45071 Orleans Cedex 2 (France)
- 3. Centre de biophysique moleculaire CBM-CNRS UPR 4301 du CNRS, rue Charles Sadron, F-45071 Orleans Cedex 2 (France)
Description
This paper reports on some results concerning the binding of diffusing ligands in a spherical 3D region randomly filled by free receptors. It is shown that commonly accepted mean-field theory which is successfully used for bulk diffusion-controlled reactions cannot describe the behavior of ligand concentration in the diffusion layer close to the region boundary. To eliminate this drawback of the theory, we introduce a new complementary diffusion equation in the boundary layer with an appropriate matching condition. Using this equation, we find the characteristic ligand penetration length and total time-dependent flux of ligand binding to free receptors randomly distributed in a spherical region. (paper)
Availability note (English)
Available from http://dx.doi.org/10.1088/1478-3975/10/4/045009Additional details
Identifiers
Publishing Information
- Journal Title
- Physical Biology (Online)
- Journal Volume
- 10
- Journal Issue
- 4
- Journal Page Range
- [7 p.]
- ISSN
- 1478-3975
INIS
- Country of Publication
- United Kingdom
- Country of Input or Organization
- International Atomic Energy Agency (IAEA)
- INIS RN
- 44126335
- Subject category
- S60: APPLIED LIFE SCIENCES;
- Descriptors DEI
- BOUNDARY LAYERS; CONCENTRATION RATIO; DIFFUSION; DIFFUSION EQUATIONS; LIGANDS; PENETRATION DEPTH; RANDOMNESS; RECEPTORS; TIME DEPENDENCE
- Descriptors DEC
- DIFFERENTIAL EQUATIONS; DIMENSIONLESS NUMBERS; EQUATIONS; LAYERS; MEMBRANE PROTEINS; ORGANIC COMPOUNDS; PARTIAL DIFFERENTIAL EQUATIONS; PROTEINS