Published May 2005 | Version v1
Journal article

Gel Electrophoresis of DNA - New Measurements and the Repton Model at High Fields

  • 1. Faculty of Physics and Applied Computer Science, AGH - University of Science and Technology, Cracow (Poland)
  • 2. Faculty of Biotechnology, Jagellonian University, Cracow (Poland)

Description

New experimental data are presented on the gel electrophoresis of DNA. Experiment was made for molecules of length 173 kbp, in 1 percent agarose gel, in TAE 1 x buffer and the field intensity between 5 and 9 V/cm. The results are compared with our computer simulations, performed within the repton model of Duke and Rubinstein. The ranges of field and molecule length are determined, where the geometration effect appears. We investigate also the field dependence of the velocity and the diffusion coefficient at the border of the geometration regime. (author)

Availability note (English)

Also available at http://th-www.if.uj.edu.pl/acta/

Additional details

Additional titles

Augmented title (English)
PACS numbers: 87.15.Tt, 05.10.Ln, 83.10.Kn

Publishing Information

Journal Title
Acta Physica Polonica. Series B
Journal Volume
B36
Journal Issue
5
Journal Page Range
p. 1653-1662
ISSN
0587-4254

Conference

Title
17. Marian Smoluchowski Symposium on Statistical Physics
Dates
4-9 Sep 2004
Place
Zakopane (Poland)

INIS

Country of Publication
Poland
Country of Input or Organization
Poland
INIS RN
36060397
Subject category
S71: CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSICS;
Resource subtype / Literary indicator
Conference
Descriptors DEI
AGAR; COMPUTERIZED SIMULATION; DIFFUSION; DNA; ELECTRIC FIELDS; ELECTROPHORESIS; GELS; MEASURING METHODS; MONTE CARLO METHOD; SOLUTIONS
Descriptors DEC
CALCULATION METHODS; CARBOHYDRATES; COLLOIDS; DISPERSIONS; HOMOGENEOUS MIXTURES; MIXTURES; NUCLEIC ACIDS; ORGANIC COMPOUNDS; POLYSACCHARIDES; SACCHARIDES; SIMULATION

Optional Information

Notes
14 refs., 9 figs.