The structure and dynamics of the Fe-CO bond in myoglobin
Creators
- 1. Centre de Recerca en Quimica Teorica, Barcelona Science Park, Josep Samitier 1-5, 08028 Barcelona (Spain)
Description
This paper is a review of our recent work on the structure and dynamics of the Fe-CO bond in carbonmonoxy myoglobin (MbCO), performed using density functional theory, Car-Parrinello molecular dynamics and hybrid quantum mechanics/molecular mechanics approaches. The results of these investigations have served to shed light onto one of the long standing questions in myoglobin research: whether the protein discriminates the CO ligand with respect to O2 by distorting the FeCO bond. The calculations show that both in the gas phase and in the protein the Fe-CO bond is essentially linear and therefore exclude the hypothesis that the CO in MbCO is sterically hindered. In contrast, hydrogen bonding between the O2 ligand and the His64 residue easily explains the protein discrimination for CO
Availability note (English)
Available online at http://stacks.iop.org/0953-8984/15/S1809/c31814.pdf or at the Web site for the Journal of Physics. Condensed Matter (ISSN 1361-648X) http://www.iop.org/Additional details
Identifiers
- URL
- http://stacks.iop.org/0953-8984/15/S1809/c31814.pdf; http://www.iop.org/;
- DOI
- 10.1088/0953-8984/15/18/314;
- PII
- S0953-8984(03)54656-2;
Publishing Information
- Journal Title
- Journal of Physics. Condensed Matter
- Journal Volume
- 15
- Journal Issue
- 18
- Journal Page Range
- p. S1809-S1822
- ISSN
- 0953-8984
- CODEN
- JCOMEL
Conference
- Title
- Symposium on the nanophysics of life sciences
- Dates
- 21-22 Jun 2002
- Place
- Copenhagen (Denmark)
INIS
- Country of Publication
- United Kingdom
- Country of Input or Organization
- International Atomic Energy Agency (IAEA)
- INIS RN
- 34055447
- Subject category
- S75: CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND SUPERFLUIDITY;
- Resource subtype / Literary indicator
- Conference
- Descriptors DEI
- CARBON MONOXIDE; CHEMICAL BONDS; DENSITY FUNCTIONAL METHOD; IRON; MOLECULAR DYNAMICS METHOD; MOLECULAR STRUCTURE; MYOGLOBIN; QUANTUM MECHANICS
- Descriptors DEC
- CALCULATION METHODS; CARBON COMPOUNDS; CARBON OXIDES; CARBOXYLIC ACIDS; CHALCOGENIDES; ELEMENTS; GLOBINS; HETEROCYCLIC ACIDS; HETEROCYCLIC COMPOUNDS; MECHANICS; METALS; ORGANIC ACIDS; ORGANIC COMPOUNDS; ORGANIC NITROGEN COMPOUNDS; OXIDES; OXYGEN COMPOUNDS; PIGMENTS; PORPHYRINS; PROTEINS; TRANSITION ELEMENTS; VARIATIONAL METHODS