Friction of N-bead macromolecules in solution: Effects of the bead-solvent interaction
Creators
- 1. Fachbereich Physik, Universitaet Kassel, Heinrich-Plett-Strasse 40, D-34132 Kassel (Germany)
Description
The role of the bead-solvent interaction has been studied for its influence on the dynamics of an N-bead macromolecule which is immersed into a solution. Using a Fokker-Planck equation for the phase-space distribution function of the macromolecule, we show that all the effects of the solution can be treated entirely in terms of the friction tensors which are assigned to each pair of interacting beads in the chain. For the high-density as well as for the critical solvent, the properties of these tensors are discussed in detail and are calculated by using several (realistic) choices of the bead-solvent potential. From the friction tensors, moreover, an expression for the center-of-mass friction coefficient of a (N-bead) chain macromolecule is derived. Numerical data for this coefficient for 'truncated' Lennard-Jones bead-solvent potential are compared with results from molecular dynamic simulations and from the phenomenological theoretical data as found in the literature
Additional details
Identifiers
Publishing Information
- Journal Title
- Physical Review. E, Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics
- Journal Volume
- 73
- Journal Issue
- 1
- Journal Page Range
- p. 011111-011111.12
- ISSN
- 1063-651X
- CODEN
- PLEEE8
INIS
- Country of Publication
- United States
- Country of Input or Organization
- International Atomic Energy Agency (IAEA)
- INIS RN
- 39083942
- Subject category
- S71: CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSICS;
- Descriptors DEI
- BIOPHYSICS; COMPUTERIZED SIMULATION; DENSITY; DISTRIBUTION FUNCTIONS; FOKKER-PLANCK EQUATION; FRICTION; FRICTION FACTOR; LENNARD-JONES POTENTIAL; MATHEMATICAL SOLUTIONS; MOLECULAR DYNAMICS METHOD; PHASE SPACE; SOLVENTS; TENSORS
- Descriptors DEC
- CALCULATION METHODS; DIFFERENTIAL EQUATIONS; DIMENSIONLESS NUMBERS; EQUATIONS; FUNCTIONS; MATHEMATICAL SPACE; PARTIAL DIFFERENTIAL EQUATIONS; PHYSICAL PROPERTIES; PHYSICS; POTENTIALS; SIMULATION; SPACE
Optional Information
- Notes
- (c) 2006 The American Physical Society