Published January 2018 | Version v1
Journal article

Specific interactions between mycobacterial FtsZ protein and curcumin derivatives: Molecular docking and ab initio molecular simulations

  • 1. Department of Computer Science and Engineering, Toyohashi University of Technology, Tempaku-cho, Toyohashi, Aichi 441-8580 (Japan)
  • 2. Institute of Food Biotechnology and Genomics, National Academy of Sciences of Ukraine, 2a, Osypovskogo str., Kyiv-123 04123 (Ukraine)

Description

Highlights: • We study interactions of filamentous temperature-sensitive Z (FtsZ) with curcumin. • Protein-ligand docking, classical MM and ab initio fragment MO methods are used. • Curcumin derivatives prefer to bind the TZT-binding site of FtsZ. • Curcumin-III binds more strongly to FtsZ than the other curcumins. • The central carbonyl groups of curcumin-III form hydrogen bonds with FtsZ. Filamentous temperature-sensitive Z (FtsZ) protein plays essential role in bacteria cell division, and its inhibition prevents Mycobacteria reproduction. Here we adopted curcumin derivatives as candidates of novel inhibitors and investigated their specific interactions with FtsZ, using ab initio molecular simulations based on protein–ligand docking, classical molecular mechanics and ab initio fragment molecular orbital (FMO) calculations. Based on FMO calculations, we specified the most preferable site of curcumin binding to FtsZ and highlighted the key amino acid residues for curcumin binding at an electronic level. The result will be useful for proposing novel inhibitors against FtsZ based on curcumin derivatives.

Availability note (English)

Available from http://dx.doi.org/10.1016/j.cplett.2017.12.045

Additional details

Identifiers

DOI
10.1016/j.cplett.2017.12.045;
PII
S0009261417311302;

Publishing Information

Journal Title
Chemical Physics Letters
Journal Volume
692
Journal Page Range
p. 166-173
ISSN
0009-2614
CODEN
CHPLBC

INIS

Optional Information

Copyright
Copyright (c) 2017 Elsevier B.V. All rights reserved.