Quantitative analysis of hepatitis B virus DNA based on raman spectroscopy combined with multivariate statistical methods
Creators
- 1. College of information Science and Engineering, Xinjiang University, Urumqi 830046 (China)
- 2. State Key Laboratory of Pathogenesis, Prevention, and Treatment of Central Asian High Incidence Diseases, The First Affiliated Hospital of Xinjiang Medical University, Urumqi 830000 (China)
- 3. Quality of Products Supervision and Inspection Institute, Urumqi 830011, Xinjiang (China)
- 4. Medical Testing Center, The First Affiliated Hospital of Xinjiang Medical University, Urumqi 830000 (China)
- 5. School of Electronic Engineering, Beijing University of Posts and Telecommunications, Beijing 100876 (China)
Description
Quantitation of hepatitis B virus deoxyribonucleic acid (HBV DNA) is the most accurate method for determining the infection level of hepatitis B. It is a very meaningful means of detecting the different replication states of HBV infection. In this study, HBV DNA was detected and quantified in 499 patients with hepatitis B by confocal Raman spectroscopy combined with multivariate analysis. The effective information related to HBV DNA in spectral data was extracted by different pretreatments according to the vibrational modes of different functional groups. Quantitative analysis of HBV DNA was carried out by using the spectrum in the characteristic range of 807.027–1700.29 cm−1 for spectral peak assignment analysis and using partial least squares to construct a quantitative model. The results show that the regression model is established by combining normalization pretreatment and multivariate analysis methods. The correlation coefficient (R c) and root mean square error of calibration from the calibration set of the selected feature range are 0.9751 and 0.3881, and the correlation coefficient (R p) of the verification set and the root mean square error of prediction from the prediction set are 0.9673 and 0.4314. respectively. In clinical medical applications, Raman spectroscopy combined with diversified analysis methods has great research potential for the quantitative detection of HBV DNA in HBV serum. (letter)
Availability note (English)
Available from http://dx.doi.org/10.1088/1612-202X/ab6855Additional details
Identifiers
Publishing Information
- Journal Title
- Laser Physics Letters (Internet)
- Journal Volume
- 17
- Journal Issue
- 2
- Journal Page Range
- [6 p.]
- ISSN
- 1612-202X
INIS
- Country of Publication
- Germany
- Country of Input or Organization
- International Atomic Energy Agency (IAEA)
- INIS RN
- 53028314
- Subject category
- S71: CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSICS;
- Descriptors DEI
- CALIBRATION; CORRELATIONS; DNA; ERRORS; HEPATITIS; LEAST SQUARE FIT; MULTIVARIATE ANALYSIS; RAMAN SPECTROSCOPY; SPECTRA; VIRUSES
- Descriptors DEC
- DIGESTIVE SYSTEM DISEASES; DISEASES; LASER SPECTROSCOPY; MATHEMATICAL SOLUTIONS; MATHEMATICS; MAXIMUM-LIKELIHOOD FIT; MICROORGANISMS; NUCLEIC ACIDS; NUMERICAL SOLUTION; ORGANIC COMPOUNDS; PARASITES; SPECTROSCOPY; STATISTICS