Published September 2017 | Version v1
Journal article

The influence of canalization on the robustness of Boolean networks

  • 1. Division of Infectious Diseases and Hospital Epidemiology, University Hospital Zurich, 8091 Zurich (Switzerland)
  • 2. Institute of Medical Virology, University of Zurich, 8006 Zurich (Switzerland)
  • 3. D-BSSE, ETH Zurich, Mattenstrasse 26, 4058 Basel (Switzerland)
  • 4. Jackson Laboratory for Genomic Medicine, Farmington, CT 06030 (United States)
  • 5. Center for Quantitative Medicine, University of Connecticut Health Center, Farmington, CT 06030 (United States)

Description

Highlights: • The Boolean algebra concept of sensitivity is generalized to c-sensitivity. • Activities and c-sensitivities of various Boolean canalizing functions are computed. • Derrida values of canalizing Boolean networks are weighted sums of c-sensitivities. Time- and state-discrete dynamical systems are frequently used to model molecular networks. This paper provides a collection of mathematical and computational tools for the study of robustness in Boolean network models. The focus is on networks governed by k-canalizing functions, a recently introduced class of Boolean functions that contains the well-studied class of nested canalizing functions. The variable activities and sensitivity of a function quantify the impact of input changes on the function output. This paper generalizes the latter concept to c-sensitivity and provides formulas for the activities and c-sensitivity of general k-canalizing functions as well as canalizing functions with more precisely defined structure. A popular measure for the robustness of a network, the Derrida value, can be expressed as a weighted sum of the c-sensitivities of the governing canalizing functions, and can also be calculated for a stochastic extension of Boolean networks. These findings provide a computationally efficient way to obtain Derrida values of Boolean networks, deterministic or stochastic, that does not involve simulation.

Availability note (English)

Available from http://dx.doi.org/10.1016/j.physd.2017.05.002

Additional details

Identifiers

DOI
10.1016/j.physd.2017.05.002;
arXiv
arXiv:1607.04474v2;
PII
S0167278916303621;

Publishing Information

Journal Title
Physica D
Journal Volume
353
Journal Page Range
p. 39-47
ISSN
0167-2789
CODEN
PDNPDT

INIS

Country of Publication
Netherlands
Country of Input or Organization
International Atomic Energy Agency (IAEA)
INIS RN
51063811
Subject category
S71: CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSICS;
Descriptors DEI
ALGEBRA; DYNAMICAL SYSTEMS; FUNCTIONS; SENSITIVITY; SIMULATION; STABILITY; STOCHASTIC PROCESSES
Descriptors DEC
MATHEMATICS

Optional Information

Copyright
Copyright (c) 2017 Elsevier B.V. All rights reserved.