The influence of canalization on the robustness of Boolean networks
- 1. Division of Infectious Diseases and Hospital Epidemiology, University Hospital Zurich, 8091 Zurich (Switzerland)
- 2. Institute of Medical Virology, University of Zurich, 8006 Zurich (Switzerland)
- 3. D-BSSE, ETH Zurich, Mattenstrasse 26, 4058 Basel (Switzerland)
- 4. Jackson Laboratory for Genomic Medicine, Farmington, CT 06030 (United States)
- 5. Center for Quantitative Medicine, University of Connecticut Health Center, Farmington, CT 06030 (United States)
Description
Highlights: • The Boolean algebra concept of sensitivity is generalized to -sensitivity. • Activities and -sensitivities of various Boolean canalizing functions are computed. • Derrida values of canalizing Boolean networks are weighted sums of -sensitivities. Time- and state-discrete dynamical systems are frequently used to model molecular networks. This paper provides a collection of mathematical and computational tools for the study of robustness in Boolean network models. The focus is on networks governed by -canalizing functions, a recently introduced class of Boolean functions that contains the well-studied class of nested canalizing functions. The variable activities and sensitivity of a function quantify the impact of input changes on the function output. This paper generalizes the latter concept to -sensitivity and provides formulas for the activities and -sensitivity of general -canalizing functions as well as canalizing functions with more precisely defined structure. A popular measure for the robustness of a network, the Derrida value, can be expressed as a weighted sum of the -sensitivities of the governing canalizing functions, and can also be calculated for a stochastic extension of Boolean networks. These findings provide a computationally efficient way to obtain Derrida values of Boolean networks, deterministic or stochastic, that does not involve simulation.
Availability note (English)
Available from http://dx.doi.org/10.1016/j.physd.2017.05.002Additional details
Identifiers
- DOI
- 10.1016/j.physd.2017.05.002;
- arXiv
- arXiv:1607.04474v2;
- PII
- S0167278916303621;
Publishing Information
- Journal Title
- Physica D
- Journal Volume
- 353
- Journal Page Range
- p. 39-47
- ISSN
- 0167-2789
- CODEN
- PDNPDT
INIS
- Country of Publication
- Netherlands
- Country of Input or Organization
- International Atomic Energy Agency (IAEA)
- INIS RN
- 51063811
- Subject category
- S71: CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSICS;
- Descriptors DEI
- ALGEBRA; DYNAMICAL SYSTEMS; FUNCTIONS; SENSITIVITY; SIMULATION; STABILITY; STOCHASTIC PROCESSES
- Descriptors DEC
- MATHEMATICS
Optional Information
- Copyright
- Copyright (c) 2017 Elsevier B.V. All rights reserved.