Published November 2006 | Version v1
Journal article

A nomenclature and data model to describe NMR experiments

  • 1. University of Cambridge, Department of Biochemistry (United Kingdom)
  • 2. European Bioinformatics Institute, Hinxton, Macromolecular Structure Database (United Kingdom)

Description

Despite ongoing efforts in organising NMR information, there is no consistent and well-described generic standard for naming NMR experiments. The main reason for the absence of a universal naming system is that the information content of the coherence pathways is difficult to describe in full detail. We propose a system that describes the common and generic elements of the coherence pathways produced by pulse sequences. The system itself is formalised by an 'NMR experiment protocol' model, which is described in the Universal Modelling Language (UML) as part of the CCPN data model. Furthermore, normalized experiment names can be derived from this proposed model. We hope this article will stimulate discussion to organise the wealth of NMR experiments, and that by bringing this discussion into the public domain we can improve and expand our proposed system to include as much information and as many NMR experiments as possible

Additional details

Identifiers

Publishing Information

Journal Title
Journal of Biomolecular NMR
Journal Volume
36
Journal Issue
3
Journal Page Range
p. 147-155
ISSN
0925-2738

INIS

Country of Publication
Netherlands
Country of Input or Organization
International Atomic Energy Agency (IAEA)
INIS RN
39115777
Subject category
S60: APPLIED LIFE SCIENCES;
Descriptors DEI
MOLECULAR STRUCTURE; NUCLEAR MAGNETIC RESONANCE; PROTEIN STRUCTURE; PROTEINS; SIMULATION
Descriptors DEC
MAGNETIC RESONANCE; ORGANIC COMPOUNDS; RESONANCE

Optional Information

Copyright
Copyright (c) 2006 Springer Science+Business Media B.V.