Published 2016 | Version v1
Journal article

O -Acetyl Side-Chains in Monosaccharides: Redundant NMR Spin-Couplings and Statistical Models for Acetate Ester Conformational Analysis

  • 1. University of Notre Dame, IN (United States)
  • 2. Omicron Biochemicals Inc., South Bend, Indiana 46617-2701 (United States)
  • 3. Facebook Inc., Seattle, WA (United States)

Description

α- and β-D-glucopyranose monoacetates 1–3 were prepared with selective 13C enrichment in the O-acetyl side-chain, and ensembles of 13C–1H and 13C–13C NMR spin-couplings (J-couplings) were measured involving the labeled carbons. Density functional theory (DFT) was applied to a set of model structures to determine which J-couplings are sensitive to rotation of the ester bond θ. Eight J-couplings (1JCC, 2JCH, 2JCC, 3JCH, and 3JCC) were found to be sensitive to θ, and four equations were parametrized to allow quantitative interpretations of experimental J-values. Inspection of J-coupling ensembles in 1–3 showed that O-acetyl side-chain conformation depends on molecular context, with flanking groups playing a dominant role in determining the properties of θ in solution. To quantify these effects, ensembles of J-couplings containing four values were used to determine the precision and accuracy of several 2-parameter statistical models of rotamer distributions across θ in 1–3. The statistical method used to generate these models has been encoded in a newly developed program, MA'AT, which is available for public use. These models were compared to O-acetyl side-chain behavior observed in a representative sample of crystal structures, and in molecular dynamics (MD) simulations of O-acetylated model structures. While the functional form of the model had little effect on the precision of the calculated mean of θ in 1–3, platykurtic models were found to give more precise estimates of the width of the distribution about the mean (expressed as circular standard deviations). Validation of these 2-parameter models to interpret ensembles of redundant J-couplings using the O-acetyl system as a test case enables future extension of the approach to other flexible elements in saccharides, such as glycosidic linkage conformation.

Availability note (English)

Available from https://www.osti.gov/servlets/purl/1463135; https://www.osti.gov/biblio/1463135; DOE Accepted Manuscript full text, or the publishers Best Available Version will be available free of charge after the embargo period

Additional details

Publishing Information

Journal Title
Journal of Physical Chemistry. B, Condensed Matter, Materials, Surfaces, Interfaces and Biophysical Chemistry
Journal Volume
121
Journal Issue
1
Journal Page Range
p. 66-77
ISSN
1520-6106

Optional Information

Contract/Grant/Project number
FC02-04ER15533
Funding organization
USDOE Office of Science - SC, Basic Energy Sciences (BES) (SC-22) (United States)
Secondary number(s)
OSTIID--1463135