O -Acetyl Side-Chains in Monosaccharides: Redundant NMR Spin-Couplings and Statistical Models for Acetate Ester Conformational Analysis
- 1. University of Notre Dame, IN (United States)
- 2. Omicron Biochemicals Inc., South Bend, Indiana 46617-2701 (United States)
- 3. Facebook Inc., Seattle, WA (United States)
Description
α- and β-D-glucopyranose monoacetates 1–3 were prepared with selective 13C enrichment in the O-acetyl side-chain, and ensembles of 13C–1H and 13C–13C NMR spin-couplings (J-couplings) were measured involving the labeled carbons. Density functional theory (DFT) was applied to a set of model structures to determine which J-couplings are sensitive to rotation of the ester bond θ. Eight J-couplings (1JCC, 2JCH, 2JCC, 3JCH, and 3JCC) were found to be sensitive to θ, and four equations were parametrized to allow quantitative interpretations of experimental J-values. Inspection of J-coupling ensembles in 1–3 showed that O-acetyl side-chain conformation depends on molecular context, with flanking groups playing a dominant role in determining the properties of θ in solution. To quantify these effects, ensembles of J-couplings containing four values were used to determine the precision and accuracy of several 2-parameter statistical models of rotamer distributions across θ in 1–3. The statistical method used to generate these models has been encoded in a newly developed program, MA'AT, which is available for public use. These models were compared to O-acetyl side-chain behavior observed in a representative sample of crystal structures, and in molecular dynamics (MD) simulations of O-acetylated model structures. While the functional form of the model had little effect on the precision of the calculated mean of θ in 1–3, platykurtic models were found to give more precise estimates of the width of the distribution about the mean (expressed as circular standard deviations). Validation of these 2-parameter models to interpret ensembles of redundant J-couplings using the O-acetyl system as a test case enables future extension of the approach to other flexible elements in saccharides, such as glycosidic linkage conformation.
Availability note (English)
Available from https://www.osti.gov/servlets/purl/1463135; https://www.osti.gov/biblio/1463135; DOE Accepted Manuscript full text, or the publishers Best Available Version will be available free of charge after the embargo periodAdditional details
Identifiers
Publishing Information
- Journal Title
- Journal of Physical Chemistry. B, Condensed Matter, Materials, Surfaces, Interfaces and Biophysical Chemistry
- Journal Volume
- 121
- Journal Issue
- 1
- Journal Page Range
- p. 66-77
- ISSN
- 1520-6106
INIS
- Country of Publication
- United States
- Country of Input or Organization
- United States
- INIS RN
- 51031719
- Subject category
- S37: INORGANIC, ORGANIC, PHYSICAL AND ANALYTICAL CHEMISTRY;
- Descriptors DEI
- ACCURACY; CARBON 13; CRYSTAL STRUCTURE; DENSITY FUNCTIONAL METHOD; ESTERS; MOLECULAR DYNAMICS METHOD; NUCLEAR MAGNETIC RESONANCE; SIMULATION; STATISTICAL MODELS
- Descriptors DEC
- CALCULATION METHODS; CARBON ISOTOPES; EVEN-ODD NUCLEI; ISOTOPES; LIGHT NUCLEI; MAGNETIC RESONANCE; MATHEMATICAL MODELS; NUCLEI; ORGANIC COMPOUNDS; RESONANCE; STABLE ISOTOPES; VARIATIONAL METHODS
Optional Information
- Contract/Grant/Project number
- FC02-04ER15533
- Funding organization
- USDOE Office of Science - SC, Basic Energy Sciences (BES) (SC-22) (United States)
- Secondary number(s)
- OSTIID--1463135