Published February 2015 | Version v1
Journal article

Anomalous transport of subdiffusing cargos by single kinesin motors: the role of mechano–chemical coupling and anharmonicity of tether

Creators

  • 1. Institute for Physics and Astronomy, University of Potsdam, Karl-Liebknecht-Str. 24/25, D-14476 Potsdam-Golm (Germany)

Description

Here we generalize our previous model of molecular motors trafficking subdiffusing cargos in viscoelastic cytosol by (i) including mechano–chemical coupling between cyclic conformational fluctuations of the motor protein driven by the reaction of ATP hydrolysis and its translational motion within the simplest two-state model of hand-over-hand motion of kinesin, and also (ii) by taking into account the anharmonicity of the tether between the motor and the cargo (its maximally possible extension length). It is shown that the major earlier results such as occurrence of normal versus anomalous transport depending on the amplitude of binding potential, cargo size and the motor turnover frequency not only survive in this more realistic model, but the results also look very similar for the correspondingly adjusted parameters. However, this more realistic model displays a substantially larger thermodynamic efficiency due to a bidirectional mechano–chemical coupling. For realistic parameters, the maximal thermodynamic efficiency can transiently be about 50% as observed for kinesins, and even larger, surprisingly also in a novel strongly anomalous (sub)transport regime, where the motor enzymatic turnovers become also anomalously slow and cannot be characterized by a turnover rate. Here anomalously slow dynamics of the cargo enforces anomalously slow cyclic kinetics of the motor protein. (paper)

Availability note (English)

Available from http://dx.doi.org/10.1088/1478-3975/12/1/016013

Additional details

Publishing Information

Journal Title
Physical Biology (Online)
Journal Volume
12
Journal Issue
1
Journal Page Range
[14 p.]
ISSN
1478-3975

INIS

Country of Publication
United Kingdom
Country of Input or Organization
International Atomic Energy Agency (IAEA)
INIS RN
47050185
Subject category
S60: APPLIED LIFE SCIENCES;
Descriptors DEI
AMPLITUDES; ATP; COUPLING; EFFICIENCY; FLUCTUATIONS; HYDROLYSIS; KINETICS; POTENTIALS; PROTEINS
Descriptors DEC
CHEMICAL REACTIONS; DECOMPOSITION; LYSIS; NUCLEOTIDES; ORGANIC COMPOUNDS; SOLVOLYSIS; VARIATIONS