Published July 19, 2004 | Version v1
Journal article

Spectral entropy criteria for structural segmentation in genomic DNA sequences

Description

The spectral entropy is calculated with Fourier structure factors and characterizes the level of structural ordering in a sequence of symbols. It may efficiently be applied to the assessment and reconstruction of the modular structure in genomic DNA sequences. We present the relevant spectral entropy criteria for the local and non-local structural segmentation in DNA sequences. The results are illustrated with the model examples and analysis of intervening exon-intron segments in the protein-coding regions

Additional details

Identifiers

DOI
10.1016/j.physleta.2004.05.060;
PII
S0375960104007844;

Publishing Information

Journal Title
Physics Letters. A
Journal Volume
328
Journal Issue
1
Journal Page Range
p. 79-86
ISSN
0375-9601
CODEN
PYLAAG

INIS

Country of Publication
Netherlands
Country of Input or Organization
International Atomic Energy Agency (IAEA)
INIS RN
36051824
Subject category
S71: CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSICS; S75: CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND SUPERFLUIDITY;
Descriptors DEI
DNA SEQUENCING; ENTROPY; MODULAR STRUCTURES; PROTEINS; STRUCTURE FACTORS
Descriptors DEC
ORGANIC COMPOUNDS; PHYSICAL PROPERTIES; STRUCTURAL CHEMICAL ANALYSIS; THERMODYNAMIC PROPERTIES

Optional Information

Copyright
Copyright (c) 2004 Elsevier Science B.V., Amsterdam, The Netherlands, All rights reserved.