Crystallization and X-ray data analysis of the 10 kDa C-terminal lid subdomain from Caenorhabditis elegans Hsp70
Creators
- 1. School of Biological Sciences, University of Edinburgh, The King's Buildings, Mayfield Road, Edinburgh EH9 3JR,Scotland (United Kingdom)
Description
Crystals of the C-terminal 10 kDa lid subdomain from the C. elegans chaperone Hsp70 have been obtained that diffract X-rays to ∼3.5 Å and belong to space group I212121. Analysis of X-ray data and initial heavy-atom phasing reveals 24 monomers in the asymmetric unit related by 432 non-crystallographic symmetry. Hsp70 is an important molecular chaperone involved in the regulation of protein folding. Crystals of the C-terminal 10 kDa helical lid domain (residues 542–640) from a Caenorhabditis elegans Hsp70 homologue have been produced that diffract X-rays to ∼3.4 Å. Crystals belong to space group I212121, with unit-cell parameters a = b = 197, c = 200 Å. The Matthews coefficient, self-rotation function and Patterson map indicate 24 monomers in the asymmetric unit, showing non-crystallographic 432 symmetry. Molecular-replacement studies using the corresponding domain from rat, the only eukaryotic homologue with a known structure, failed and a mercury derivative was obtained. Preliminary MAD phasing using SHELXD and SHARP for location and refinement of the heavy-atom substructure and SOLOMON for density modification produced interpretable maps with a clear protein–solvent boundary. Further density-modification, model-building and refinement are currently under way
Availability note (English)
Available from http://dx.doi.org/10.1107/S1744309106032064; Available from http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2242859Additional details
Identifiers
- URL
- http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2242859;
- DOI
- 10.1107/S1744309106032064;
- PII
- S1744309106032064;
Publishing Information
- Journal Title
- Acta Crystallographica. Section F
- Journal Volume
- 62
- Journal Issue
- Pt 9
- Journal Page Range
- p. 938-943
- ISSN
- 1744-3091
- CODEN
- ACSFCL
INIS
- Country of Publication
- United Kingdom
- Country of Input or Organization
- International Atomic Energy Agency (IAEA)
- INIS RN
- 46061606
- Subject category
- S75: CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND SUPERFLUIDITY;
- Descriptors DEI
- ATOMS; CRYSTALLIZATION; CRYSTALS; DATA ANALYSIS; DENSITY; MERCURY; MODIFICATIONS; MONOMERS; PROTEINS; RATS; ROTATION; SOLVENTS; SPACE GROUPS; SYMMETRY
- Descriptors DEC
- ANIMALS; DATA PROCESSING; ELEMENTS; MAMMALS; METALS; MOTION; ORGANIC COMPOUNDS; PHASE TRANSFORMATIONS; PHYSICAL PROPERTIES; PROCESSING; RODENTS; SYMMETRY GROUPS; VERTEBRATES
Optional Information
- Copyright
- Copyright (c) International Union of Crystallography 2006
- Notes
- PMCID: PMC2242859; PMID: 16946485; PUBLISHER-ID: bo5004; OAI: oai:pubmedcentral.nih.gov:2242859; This is an open-access article distributed under the terms described at http://journals.iucr.org/services/termsofuse.html.