A strenuous experimental journey searching for spectroscopic evidence of a bridging nickel–iron–hydride in [NiFe] hydrogenase
- 1. Lawrence Berkeley National Laboratory, Berkeley, CA 94720 (United States)
- 2. University of California, 1 Cyclotron Road, Davis, CA 95616 (United States)
- 3. SPring-8/JASRI, 1-1-1 Kouto, Sayo-cho, Sayo-gun, Hyogo 679-5198 (Japan)
- 4. Max Planck Institute for Chemical Energy Conversion, D-45470 Mülheim an der Ruhr (Germany)
- 5. University of Hyogo, 3-2-1 Kouto, Kamigori-cho, Ako-gun, Hyogo 678-1297 (Japan)
Description
Direct spectroscopic evidence for a hydride bridge in the Ni–R form of [NiFe] hydrogenase has been obtained using iron-specific nuclear resonance vibrational spectroscopy. This article focuses on the long and strenuous experimental journey to search for and identify this first spectroscopic evidence for a hydride in Ni–R. Direct spectroscopic evidence for a hydride bridge in the Ni–R form of [NiFe] hydrogenase has been obtained using iron-specific nuclear resonance vibrational spectroscopy (NRVS). The Ni–H–Fe wag mode at 675 cm−1 is the first spectroscopic evidence for a bridging hydride in Ni–R as well as the first iron-hydride-related NRVS feature observed for a biological system. Although density function theory (DFT) calculation assisted the determination of the Ni–R structure, it did not predict the Ni–H–Fe wag mode at ∼675 cm−1 before NRVS. Instead, the observed Ni–H–Fe mode provided a critical reference for the DFT calculations. While the overall science about Ni–R is presented and discussed elsewhere, this article focuses on the long and strenuous experimental journey to search for and experimentally identify the Ni–H–Fe wag mode in a Ni–R sample. As a methodology, the results presented here will go beyond Ni–R and hydrogenase research and will also be of interest to other scientists who use synchrotron radiation for measuring dilute samples or weak spectroscopic features.
Availability note (English)
Available from http://dx.doi.org/10.1107/S1600577515017816; Available from http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4629863Additional details
Identifiers
- DOI
- 10.1107/S1600577515017816;
- PII
- S1600577515017816;
Publishing Information
- Journal Title
- Journal of Synchrotron Radiation
- Journal Volume
- 22
- Journal Issue
- Pt 6
- Journal Page Range
- p. 1334-1344
- ISSN
- 0909-0495
- CODEN
- JSYRES
INIS
- Country of Publication
- Denmark
- Country of Input or Organization
- International Atomic Energy Agency (IAEA)
- INIS RN
- 49086748
- Subject category
- S43: PARTICLE ACCELERATORS; S46: INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND TECHNOLOGY;
- Descriptors DEI
- BRIDGES; HYDROGENASES; RESONANCE; SYNCHROTRON RADIATION
- Descriptors DEC
- BREMSSTRAHLUNG; ELECTROMAGNETIC RADIATION; ENZYMES; MECHANICAL STRUCTURES; ORGANIC COMPOUNDS; OXIDOREDUCTASES; PROTEINS; RADIATIONS
Optional Information
- Copyright
- Copyright (c) International Union of Crystallography 2015
- Notes
- PMCID: PMC4629863; PMID: 26524296; PMID: 26524296; PUBLISHER-ID: ie5149; OAI: oai:pubmedcentral.nih.gov:4629863; This is an open-access article distributed under the terms described at http://journals.iucr.org/services/termsofuse.html.