Purification, crystallization and preliminary X-ray diffraction analysis of the carbohydrate-binding region of the Streptococcus gordonii adhesin GspB
Creators
- 1. Department of Pharmacology, Vanderbilt University Medical Center, Nashville, TN 37232-6600 (United States)
- 2. Department of Medicine, Veterans Affairs Medical Center, University of California, San Francisco, CA 94121 (United States)
- 3. Department of Biochemistry and Biophysics, University of California, San Francisco, California 94158 (United States)
- 4. Molecular Biology Division, Veterans Affairs Medical Center, San Francisco, California 94121 (United States)
- 5. Department of Biochemistry, Vanderbilt University Medical Center, Nashville, TN 37232-6600 (United States)
Description
The carbohydrate-binding region of GspB from S. gordonii strain M99 was crystallized in space group P212121 and data were collected to 1.3 Å resolution. The carbohydrate-binding region of the bacterial adhesin GspB from Streptococcus gordonii strain M99 (GspBBR) was expressed in Escherichia coli and purified using affinity and size-exclusion chromatography. Separate sparse-matrix screening of GspBBR buffered in either 20 mM Tris pH 7.4 or 20 mM HEPES pH 7.5 resulted in different crystallographic behavior such that different precipitants, salts and additives supported crystallization of GspBBR in each buffer. While both sets of conditions supported crystal growth in space group P212121, the crystals had distinct unit-cell parameters of a = 33.3, b = 86.7, c = 117.9 Å for crystal form 1 and a = 34.6, b = 98.3, c = 99.0 Å for crystal form 2. Additive screening improved the crystals grown in both conditions such that diffraction extended to beyond 2 Å resolution. A complete data set has been collected to 1.3 Å resolution with an overall Rmerge value of 0.04 and an Rmerge value of 0.33 in the highest resolution shell
Availability note (English)
Available from http://dx.doi.org/10.1107/S1744309110036535; Available from http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3001660Additional details
Identifiers
- URL
- http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3001660;
- DOI
- 10.1107/S1744309110036535;
- PII
- S1744309110036535;
Publishing Information
- Journal Title
- Acta Crystallographica. Section F
- Journal Volume
- 66
- Journal Issue
- Pt 11
- Journal Page Range
- p. 1503-1507
- ISSN
- 1744-3091
- CODEN
- ACSFCL
INIS
- Country of Publication
- United Kingdom
- Country of Input or Organization
- International Atomic Energy Agency (IAEA)
- INIS RN
- 46072732
- Subject category
- S75: CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND SUPERFLUIDITY;
- Descriptors DEI
- AFFINITY; BUFFERS; CRYSTAL GROWTH; CRYSTALLIZATION; CRYSTALS; ESCHERICHIA COLI; RESOLUTION; SALTS; SCREENING; SHELLS; SPACE GROUPS; STRAINS; X-RAY DIFFRACTION
- Descriptors DEC
- BACTERIA; COHERENT SCATTERING; DIFFRACTION; MICROORGANISMS; PHASE TRANSFORMATIONS; SCATTERING; SYMMETRY GROUPS
Optional Information
- Copyright
- Copyright (c) International Union of Crystallography 2010
- Notes
- PMCID: PMC3001660; PMID: 21045307; PUBLISHER-ID: xb5023; OAI: oai:pubmedcentral.nih.gov:3001660