Published October 29, 2010 | Version v1
Journal article

Purification, crystallization and preliminary X-ray diffraction analysis of the carbohydrate-binding region of the Streptococcus gordonii adhesin GspB

  • 1. Department of Pharmacology, Vanderbilt University Medical Center, Nashville, TN 37232-6600 (United States)
  • 2. Department of Medicine, Veterans Affairs Medical Center, University of California, San Francisco, CA 94121 (United States)
  • 3. Department of Biochemistry and Biophysics, University of California, San Francisco, California 94158 (United States)
  • 4. Molecular Biology Division, Veterans Affairs Medical Center, San Francisco, California 94121 (United States)
  • 5. Department of Biochemistry, Vanderbilt University Medical Center, Nashville, TN 37232-6600 (United States)

Description

The carbohydrate-binding region of GspB from S. gordonii strain M99 was crystallized in space group P212121 and data were collected to 1.3 Å resolution. The carbohydrate-binding region of the bacterial adhesin GspB from Streptococcus gordonii strain M99 (GspBBR) was expressed in Escherichia coli and purified using affinity and size-exclusion chromatography. Separate sparse-matrix screening of GspBBR buffered in either 20 mM Tris pH 7.4 or 20 mM HEPES pH 7.5 resulted in different crystallographic behavior such that different precipitants, salts and additives supported crystallization of GspBBR in each buffer. While both sets of conditions supported crystal growth in space group P212121, the crystals had distinct unit-cell parameters of a = 33.3, b = 86.7, c = 117.9 Å for crystal form 1 and a = 34.6, b = 98.3, c = 99.0 Å for crystal form 2. Additive screening improved the crystals grown in both conditions such that diffraction extended to beyond 2 Å resolution. A complete data set has been collected to 1.3 Å resolution with an overall Rmerge value of 0.04 and an Rmerge value of 0.33 in the highest resolution shell

Availability note (English)

Available from http://dx.doi.org/10.1107/S1744309110036535; Available from http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3001660

Additional details

Publishing Information

Journal Title
Acta Crystallographica. Section F
Journal Volume
66
Journal Issue
Pt 11
Journal Page Range
p. 1503-1507
ISSN
1744-3091
CODEN
ACSFCL

INIS

Country of Publication
United Kingdom
Country of Input or Organization
International Atomic Energy Agency (IAEA)
INIS RN
46072732
Subject category
S75: CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND SUPERFLUIDITY;
Descriptors DEI
AFFINITY; BUFFERS; CRYSTAL GROWTH; CRYSTALLIZATION; CRYSTALS; ESCHERICHIA COLI; RESOLUTION; SALTS; SCREENING; SHELLS; SPACE GROUPS; STRAINS; X-RAY DIFFRACTION
Descriptors DEC
BACTERIA; COHERENT SCATTERING; DIFFRACTION; MICROORGANISMS; PHASE TRANSFORMATIONS; SCATTERING; SYMMETRY GROUPS

Optional Information

Copyright
Copyright (c) International Union of Crystallography 2010
Notes
PMCID: PMC3001660; PMID: 21045307; PUBLISHER-ID: xb5023; OAI: oai:pubmedcentral.nih.gov:3001660