Treating electrostatics with Wolf summation in combined quantum mechanical and molecular mechanical simulations
Creators
- 1. Department of Chemistry and Chemical Biology, Indiana University–Purdue University Indianapolis, 402 N. Blackford Street, Indianapolis, Indiana 46202 (United States)
Description
The Wolf summation approach [D. Wolf et al., J. Chem. Phys. 110, 8254 (1999)], in the damped shifted force (DSF) formalism [C. J. Fennell and J. D. Gezelter, J. Chem. Phys. 124, 234104 (2006)], is extended for treating electrostatics in combined quantum mechanical and molecular mechanical (QM/MM) molecular dynamics simulations. In this development, we split the QM/MM electrostatic potential energy function into the conventional Coulomb r−1 term and a term that contains the DSF contribution. The former is handled by the standard machinery of cutoff-based QM/MM simulations whereas the latter is incorporated into the QM/MM interaction Hamiltonian as a Fock matrix correction. We tested the resulting QM/MM-DSF method for two solution-phase reactions, i.e., the association of ammonium and chloride ions and a symmetric SN2 reaction in which a methyl group is exchanged between two chloride ions. The performance of the QM/MM-DSF method was assessed by comparing the potential of mean force (PMF) profiles with those from the QM/MM-Ewald and QM/MM-isotropic periodic sum (IPS) methods, both of which include long-range electrostatics explicitly. For ion association, the QM/MM-DSF method successfully eliminates the artificial free energy drift observed in the QM/MM-Cutoff simulations, in a remarkable agreement with the two long-range-containing methods. For the SN2 reaction, the free energy of activation obtained by the QM/MM-DSF method agrees well with both the QM/MM-Ewald and QM/MM-IPS results. The latter, however, requires a greater cutoff distance than QM/MM-DSF for a proper convergence of the PMF. Avoiding time-consuming lattice summation, the QM/MM-DSF method yields a 55% reduction in computational cost compared with the QM/MM-Ewald method. These results suggest that, in addition to QM/MM-IPS, the QM/MM-DSF method may serve as another efficient and accurate alternative to QM/MM-Ewald for treating electrostatics in condensed-phase simulations of chemical reactions
Additional details
Identifiers
- DOI
- 10.1063/1.4934880;
Publishing Information
- Journal Title
- Journal of Chemical Physics
- Journal Volume
- 143
- Journal Issue
- 17
- Journal Page Range
- p. 174111-174111.7
- ISSN
- 0021-9606
- CODEN
- JCPSA6
INIS
- Country of Publication
- United States
- Country of Input or Organization
- International Atomic Energy Agency (IAEA)
- INIS RN
- 47063328
- Subject category
- S37: INORGANIC, ORGANIC, PHYSICAL AND ANALYTICAL CHEMISTRY;
- Descriptors DEI
- CHLORINE IONS; COMPARATIVE EVALUATIONS; ELECTROSTATICS; FREE ENERGY; FUNCTIONS; HAMILTONIANS; INTERACTIONS; MOLECULAR DYNAMICS METHOD; POTENTIAL ENERGY; QUANTUM MECHANICS; SIMULATION; SOLUTIONS; SYMMETRY
- Descriptors DEC
- CALCULATION METHODS; CHARGED PARTICLES; DISPERSIONS; ENERGY; EVALUATION; HOMOGENEOUS MIXTURES; IONS; MATHEMATICAL OPERATORS; MECHANICS; MIXTURES; PHYSICAL PROPERTIES; QUANTUM OPERATORS; THERMODYNAMIC PROPERTIES
Optional Information
- Notes
- (c) 2015 AIP Publishing LLC