1H NMR structural characterization of a recombinant kringle 2 domain from human tissue-type plasminogen activator
Creators
- 1. Carnegie Mellon Univ., Pittsburgh, PA (USA)
- 2. Genentech, Inc., South San Francisco, CA (USA)
Description
The kringle 2 domain of human tissue-type plasminogen activator (t-PA) has been characterized via 1H NMR spectroscopy at 300 and 620 MHz. The experiments were performed on the isolated domain obtained by expression of the 174-263 portion of t-PA in Escherichia coli. The spectrum of t-Pa kringle 2 is characteristic of a globular structure and shows overall similarity to that of the plasminogen (PGN) kringle 4. Spectral comparison with human and bovine PGN kringle 4 identified side-chain resonances from Leu46, which afford a fingerprint of kringle folding, and from most of the aromatic ring spin systems. Ligand-binding studies confirm that t-PA kringle 2 binds L-lysine with an association constant Ka ∼ 11.9 mM-1. The data indicate that homologous or conserved residues relative to those that compose the lysine-binding sites of PGN kringles 1 and 4 are involved in the binding of L-lysine to t-PA kringle 2. These include Tyr36 and, within the kringle inner loop, Trp62, His64, Trp72, and Tyr74. Several labile NH protons of t-PA kringle 2 exhibit retarded H-exchange kinetics, requiring more than a week in 2H2O for full deuteration in the presence of L-lysine at 37 degree C. This reveals that kringle 2 is endowed with a compact, dynamically stable conformation. Proton Overhauser experiments in 1H2O, centered on well-resolved NH resonances between 9.8 and 12 ppm, identify signals arising from the His48a imidazole NH3 proton and the three Trp indole NH1 protons. Overall, the data indicate a highly structured conformation for the recombinant t-PA kringle 2 that is closely related to that of the previously investigated PGN kringles 1, 4, and 5
Additional details
Publishing Information
- Journal Title
- Biochemistry
- Journal Volume
- 28
- Journal Issue
- 24
- Series
- Biochemistry.
- Journal Page Range
- 9350-9360
- ISSN
- 0006-2960
- CODEN
- BICHA
INIS
- Country of Publication
- United States
- Country of Input or Organization
- United States
- INIS RN
- 21058652
- Subject category
- S62: RADIOLOGY AND NUCLEAR MEDICINE;
- Descriptors DEI
- CATTLE; DEUTERIUM COMPOUNDS; GENE REGULATION; HEAVY WATER; HISTIDINE; IMIDAZOLES; ISOTOPE EFFECTS; LEUCINE; MAN; NUCLEAR MAGNETIC RESONANCE; OVERHAUSER EFFECT; PH VALUE; PLASMINOGEN; PROTONS; SERINE PROTEINASES; TITRATION; TRYPTOPHAN
- Descriptors DEC
- AMINO ACIDS; ANIMALS; AZOLES; BARYONS; BLOOD COAGULATION FACTORS; CARBOXYLIC ACIDS; CATIONS; CHARGED PARTICLES; COAGULANTS; DOMESTIC ANIMALS; DRUGS; ELEMENTARY PARTICLES; ENZYMES; FERMIONS; HADRONS; HEMATOLOGIC AGENTS; HETEROCYCLIC ACIDS; HETEROCYCLIC COMPOUNDS; HYDROGEN COMPOUNDS; HYDROGEN IONS; HYDROGEN IONS 1 PLUS; HYDROLASES; INDOLES; IONS; MAGNETIC RESONANCE; MAMMALS; NUCLEONS; ORGANIC ACIDS; ORGANIC COMPOUNDS; ORGANIC NITROGEN COMPOUNDS; OXYGEN COMPOUNDS; PEPTIDE HYDROLASES; POLAR SOLVENTS; PRIMATES; PYRROLES; RESONANCE; RUMINANTS; SOLVENTS; VERTEBRATES; WATER