Published September 2010 | Version v1
Journal article

Generalized-ensemble molecular dynamics and Monte Carlo algorithms beyond the limit of the multicanonical algorithm

  • 1. Research Center for Computational Science, Institute for Molecular Science and Department of Structural Molecular Science, The Graduate University for Advanced Studies, Okazaki, Aichi 444-8585 (Japan)

Description

I review two new generalized-ensemble algorithms for molecular dynamics and Monte Carlo simulations of biomolecules, that is, the multibaric–multithermal algorithm and the partial multicanonical algorithm. In the multibaric–multithermal algorithm, two-dimensional random walks not only in the potential-energy space but also in the volume space are realized. One can discuss the temperature dependence and pressure dependence of biomolecules with this algorithm. The partial multicanonical simulation samples a wide range of only an important part of potential energy, so that one can concentrate the effort to determine a multicanonical weight factor only on the important energy terms. This algorithm has higher sampling efficiency than the multicanonical and canonical algorithms. (review)

Availability note (English)

Available from http://dx.doi.org/10.1088/2043-6254/1/3/033002

Additional details

Identifiers

Publishing Information

Journal Title
Advances in Natural Sciences. Nanoscience and Nanotechnology (Online)
Journal Volume
1
Journal Issue
3
Journal Page Range
[8 p.]
ISSN
2043-6262