Generalized-ensemble molecular dynamics and Monte Carlo algorithms beyond the limit of the multicanonical algorithm
Creators
- 1. Research Center for Computational Science, Institute for Molecular Science and Department of Structural Molecular Science, The Graduate University for Advanced Studies, Okazaki, Aichi 444-8585 (Japan)
Description
I review two new generalized-ensemble algorithms for molecular dynamics and Monte Carlo simulations of biomolecules, that is, the multibaric–multithermal algorithm and the partial multicanonical algorithm. In the multibaric–multithermal algorithm, two-dimensional random walks not only in the potential-energy space but also in the volume space are realized. One can discuss the temperature dependence and pressure dependence of biomolecules with this algorithm. The partial multicanonical simulation samples a wide range of only an important part of potential energy, so that one can concentrate the effort to determine a multicanonical weight factor only on the important energy terms. This algorithm has higher sampling efficiency than the multicanonical and canonical algorithms. (review)
Availability note (English)
Available from http://dx.doi.org/10.1088/2043-6254/1/3/033002Additional details
Identifiers
Publishing Information
- Journal Title
- Advances in Natural Sciences. Nanoscience and Nanotechnology (Online)
- Journal Volume
- 1
- Journal Issue
- 3
- Journal Page Range
- [8 p.]
- ISSN
- 2043-6262
INIS
- Country of Publication
- United Kingdom
- Country of Input or Organization
- International Atomic Energy Agency (IAEA)
- INIS RN
- 44125745
- Subject category
- S75: CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND SUPERFLUIDITY; S36: MATERIALS SCIENCE;
- Descriptors DEI
- ALGORITHMS; COMPUTERIZED SIMULATION; GRAPH THEORY; MOLECULAR DYNAMICS METHOD; MONTE CARLO METHOD; POTENTIAL ENERGY; PRESSURE DEPENDENCE; REVIEWS; TEMPERATURE DEPENDENCE
- Descriptors DEC
- CALCULATION METHODS; DOCUMENT TYPES; ENERGY; MATHEMATICAL LOGIC; MATHEMATICS; SIMULATION