Unraveling protein dynamics through fast spectral density mapping
Creators
- 1. UMR UM1/5048 CNRS/554 INSERM, Centre de Biochimie Structurale (France)
- 2. Universite H. Poincare, Nancy 1, Methodologie RMN (UMR 7565 CNRS-UHP, Nancy 1) (France)
Description
Spectral density mapping at multiple NMR field strengths is probably the best method to describe the dynamical behavior of a protein in solution through the analysis of 15N heteronuclear relaxation parameters. Nevertheless, such analyses are scarcely reported in the literature, probably because this method is excessively demanding in spectrometer measuring time. Indeed, when using n different magnetic fields and assuming the validity of the high frequency approximation, the discrete sampling of the spectral density function with 2n + 1 points needs the measurement of 3n15N heteronuclear relaxation measurements (nR1, nR2, and n15N{1H}NOEs). Based on further approximations, we proposed a new strategy that allows us to describe the spectral density with n + 2 points, with the measurement of a total of n + 2 heteronuclear relaxation parameters. Applied to the dynamics analysis of the protein p13MTCP1 at three different NMR fields, this approach allowed us to divide by nearly a factor of two the total measuring time, without altering further results obtained by the 'model free' analysis of the resulting spectral densities. Furthermore, simulations have shown that this strategy remains applicable to any low isotropically tumbling protein (τc>3 ns), and is valid for the types of motion generally envisaged for proteins
Additional details
Identifiers
Publishing Information
- Journal Title
- Journal of Biomolecular NMR
- Journal Volume
- 37
- Journal Issue
- 3
- Journal Page Range
- p. 159-177
- ISSN
- 0925-2738
INIS
- Country of Publication
- Netherlands
- Country of Input or Organization
- International Atomic Energy Agency (IAEA)
- INIS RN
- 39115757
- Subject category
- S60: APPLIED LIFE SCIENCES;
- Descriptors DEI
- MAGNETIC FIELDS; NITROGEN 15; NUCLEAR MAGNETIC RESONANCE; PROTEIN STRUCTURE; PROTEINS; RELAXATION; SPECTRAL DENSITY; SPECTROMETERS
- Descriptors DEC
- FUNCTIONS; ISOTOPES; LIGHT NUCLEI; MAGNETIC RESONANCE; MEASURING INSTRUMENTS; NITROGEN ISOTOPES; NUCLEI; ODD-EVEN NUCLEI; ORGANIC COMPOUNDS; RESONANCE; SPECTRAL FUNCTIONS; STABLE ISOTOPES
Optional Information
- Copyright
- Copyright (c) 2007 Springer Science+Business Media B.V.