Automated solvent artifact removal and base plane correction of multidimensional NMR protein spectra by AUREMOL-SSA
Creators
- 1. University of Regensburg, Institute of Biophysics and Physical Biochemistry (Germany)
- 2. University of Aveiro, Department Electrical Engineering, Telecommunications and Informatics (Portugal)
- 3. BioSpin GmbH, Software Department (Germany)
Description
Strong solvent signals lead to a disappearance of weak protein signals close to the solvent resonance frequency and to base plane variations all over the spectrum. AUREMOL-SSA provides an automated approach for solvent artifact removal from multidimensional NMR protein spectra. Its core algorithm is based on singular spectrum analysis (SSA) in the time domain and is combined with an automated base plane correction in the frequency domain. The performance of the method has been tested on synthetic and experimental spectra including two-dimensional NOESY and TOCSY spectra and a three-dimensional 1H,13C-HCCH-TOCSY spectrum. It can also be applied to frequency domain spectra since an optional inverse Fourier transformation is included in the algorithm.
Additional details
Identifiers
Publishing Information
- Journal Title
- Journal of Biomolecular NMR
- Journal Volume
- 47
- Journal Issue
- 2
- Journal Page Range
- p. 101-111
- ISSN
- 0925-2738
INIS
- Country of Publication
- Netherlands
- Country of Input or Organization
- International Atomic Energy Agency (IAEA)
- INIS RN
- 42034985
- Subject category
- S62: RADIOLOGY AND NUCLEAR MEDICINE;
- Descriptors DEI
- ALGORITHMS; CARBON 13; CORRECTIONS; FOURIER TRANSFORMATION; HYDROGEN 1; NMR SPECTRA; NUCLEAR MAGNETIC RESONANCE; PROTEINS; SOLVENTS
- Descriptors DEC
- CARBON ISOTOPES; EVEN-ODD NUCLEI; HYDROGEN ISOTOPES; INTEGRAL TRANSFORMATIONS; ISOTOPES; LIGHT NUCLEI; MAGNETIC RESONANCE; MATHEMATICAL LOGIC; NUCLEI; ODD-EVEN NUCLEI; ORGANIC COMPOUNDS; RESONANCE; SPECTRA; STABLE ISOTOPES; TRANSFORMATIONS
Optional Information
- Copyright
- Copyright (c) 2010 Springer Science+Business Media B.V.