Pore-blockade times for field-driven polymer translocation
- 1. Institute for Theoretical Physics, Universiteit Utrecht, Leuvenlaan 4, 3584 CE Utrecht (Netherlands)
- 2. Institute for Theoretical Physics, Universiteit van Amsterdam, Valckenierstraat 65, 1018 XE Amsterdam (Netherlands)
- 3. Department of Physics, University of Warwick, Coventry CV4 7AL (United Kingdom)
Description
We study pore-blockade times for a translocating polymer of length N, driven by a field E across the pore in three dimensions. The polymer performs Rouse dynamics, i.e., we consider polymer dynamics in the absence of hydrodynamical interactions. We find that the typical time for which the pore remains blocked during a translocation event scales as ∼N(1+2ν)/(1+ν)/E, where ν approx. = 0.588 is the Flory exponent for the polymer. We show, in line with our previous work, that this scaling behavior stems from polymer dynamics in the immediate vicinity of the pore-in particular, the memory effects in the polymer chain tension imbalance across the pore. This result, like numerical results from several other groups, violates the lower bound ∼N1+ν/E suggested earlier in the literature. We discuss why this lower bound is incorrect and show, on the basis of the conservation of energy, that the correct lower bound for the pore-blockade time for field-driven translocation is given by ηN2ν/E, where η is the viscosity of the medium surrounding the polymer
Availability note (English)
Available from http://dx.doi.org/10.1088/0953-8984/20/9/095224Additional details
Identifiers
- DOI
- 10.1088/0953-8984/20/9/095224;
- PII
- S0953-8984(08)64474-4;
Publishing Information
- Journal Title
- Journal of Physics. Condensed Matter
- Journal Volume
- 20
- Journal Issue
- 9
- Journal Page Range
- [7 p.]
- ISSN
- 0953-8984
- CODEN
- JCOMEL
INIS
- Country of Publication
- United Kingdom
- Country of Input or Organization
- International Atomic Energy Agency (IAEA)
- INIS RN
- 40035531
- Subject category
- S75: CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND SUPERFLUIDITY;
- Descriptors DEI
- INTERACTIONS; POLYMERS; SCALING; TRANSLOCATION; VISCOSITY