Published March 5, 2008 | Version v1
Journal article

Pore-blockade times for field-driven polymer translocation

  • 1. Institute for Theoretical Physics, Universiteit Utrecht, Leuvenlaan 4, 3584 CE Utrecht (Netherlands)
  • 2. Institute for Theoretical Physics, Universiteit van Amsterdam, Valckenierstraat 65, 1018 XE Amsterdam (Netherlands)
  • 3. Department of Physics, University of Warwick, Coventry CV4 7AL (United Kingdom)

Description

We study pore-blockade times for a translocating polymer of length N, driven by a field E across the pore in three dimensions. The polymer performs Rouse dynamics, i.e., we consider polymer dynamics in the absence of hydrodynamical interactions. We find that the typical time for which the pore remains blocked during a translocation event scales as ∼N(1+2ν)/(1+ν)/E, where ν approx. = 0.588 is the Flory exponent for the polymer. We show, in line with our previous work, that this scaling behavior stems from polymer dynamics in the immediate vicinity of the pore-in particular, the memory effects in the polymer chain tension imbalance across the pore. This result, like numerical results from several other groups, violates the lower bound ∼N1+ν/E suggested earlier in the literature. We discuss why this lower bound is incorrect and show, on the basis of the conservation of energy, that the correct lower bound for the pore-blockade time for field-driven translocation is given by ηN2ν/E, where η is the viscosity of the medium surrounding the polymer

Availability note (English)

Available from http://dx.doi.org/10.1088/0953-8984/20/9/095224

Additional details

Identifiers

DOI
10.1088/0953-8984/20/9/095224;
PII
S0953-8984(08)64474-4;

Publishing Information

Journal Title
Journal of Physics. Condensed Matter
Journal Volume
20
Journal Issue
9
Journal Page Range
[7 p.]
ISSN
0953-8984
CODEN
JCOMEL

INIS

Country of Publication
United Kingdom
Country of Input or Organization
International Atomic Energy Agency (IAEA)
INIS RN
40035531
Subject category
S75: CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND SUPERFLUIDITY;
Descriptors DEI
INTERACTIONS; POLYMERS; SCALING; TRANSLOCATION; VISCOSITY