Published May 7, 2008 | Version v1
Journal article

Unbiased computation of transition times by pathway recombination

  • 1. Institute for Theoretical Physics, Utrecht University, Leuvenlaan 4, Utrecht 3584 CE (Netherlands)
  • 2. Instituut-Lorentz for Theoretical Physics, Leiden University, Niels Bohrweg 2, Leiden 2333 CA (Netherlands)

Description

In many systems, the time scales of the microscopic dynamics and macroscopic dynamics of interest are separated by many orders of magnitude. Examples abound, for instance, nucleation, protein folding, and chemical reactions. For these systems, direct simulation of phase space trajectories does not efficiently determine most physical quantities of interest. The past decade has seen the advent of methods circumventing brute force simulation. For most dynamical quantities, these methods all share the drawback of systematical errors. We present a novel method for generating ensembles of phase space trajectories. By sampling small pieces of these trajectories in different phase space domains and piecing them together in a smart way using equilibrium properties, we obtain physical quantities such as transition times. This method does not have any systematical error and is very efficient; the computational effort to calculate the first passage time across a free energy barrier does not increase with the height of the barrier. The strength of the method is shown in the Ising model. Accurate measurements of nucleation times span almost ten orders of magnitude and reveal corrections to classical nucleation theory

Additional details

Identifiers

Publishing Information

Journal Title
Journal of Chemical Physics
Journal Volume
128
Journal Issue
17
Journal Page Range
p. 174108-174108.5
ISSN
0021-9606
CODEN
JCPSA6

INIS

Country of Publication
United States
Country of Input or Organization
International Atomic Energy Agency (IAEA)
INIS RN
39113867
Subject category
S71: CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSICS;
Descriptors DEI
CALCULATION METHODS; CHEMICAL REACTIONS; FREE ENERGY; ISING MODEL; NUCLEATION; PHASE SPACE; RECOMBINATION; SIMULATION; TRAJECTORIES
Descriptors DEC
CRYSTAL MODELS; ENERGY; MATHEMATICAL MODELS; MATHEMATICAL SPACE; PHYSICAL PROPERTIES; SPACE; THERMODYNAMIC PROPERTIES

Optional Information

Notes
(c) 2008 American Institute of Physics