Published November 1, 2020 | Version v1
Journal article

Effect of local dissociations in bidirectional transport of driven particles

  • 1. Department of Mathematics, Indian Institute of Technology Ropar, Rupnagar-140001, Punjab (India)
  • 2. Department of Chemistry, Department of Chemical and Biomolecular Engineering, Department of Physics and Astronomy, Center for Theoretical Biological Physics, Rice University, Houston, TX 77005 (United States)

Description

Motivated by the complex processes of cellular transport when different types of biological molecular motors can move in opposite directions along protein filaments while also detaching from them, we developed a theoretical model of the bidirectional motion of driven particles. It utilizes a totally asymmetric simple exclusion process framework to analyze the dynamics of particles moving in opposite directions along the lattice of discrete sites while the particles might also dissociate from the filament in the bulk of the system. Mean-field theoretical arguments supported by extensive Monte Carlo simulations are presented in order to understand how the localized particle dissociations affect the bidirectional dynamics and spontaneous symmetry-breaking phenomena. It is found that changes in the amplitudes and in the symmetry of dissociation rates lead to significant modifications in the dynamic properties and in the stationary phase diagrams. These changes are explained using simple physical arguments. Our theoretical method clarifies some aspects of microscopic mechanisms of complex transport phenomena in biological systems. (paper)

Availability note (English)

Available from http://dx.doi.org/10.1088/1742-5468/abbed7

Additional details

Identifiers

Publishing Information

Journal Title
Journal of Statistical Mechanics
Journal Volume
2020
Journal Issue
11
Journal Page Range
[26 p.]
ISSN
1742-5468

INIS

Country of Publication
United Kingdom
Country of Input or Organization
International Atomic Energy Agency (IAEA)
INIS RN
53028788
Subject category
S71: CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSICS;
Descriptors DEI
AMPLITUDES; ASYMMETRY; COMPUTERIZED SIMULATION; FILAMENTS; MEAN-FIELD THEORY; MONTE CARLO METHOD; PHASE DIAGRAMS; PROTEINS; SYMMETRY BREAKING
Descriptors DEC
CALCULATION METHODS; DIAGRAMS; INFORMATION; ORGANIC COMPOUNDS; SIMULATION