Assessment of CCSD(T), MP2, and DFT methods for the calculations of structures and interaction energies of the peptide backbone with water molecules
Creators
- 1. Graduate School of New Drug Discovery and Development, Chungnam National University, Daejeon 34134 (Korea, Republic of)
- 2. Department of Chemistry and BK21 PLUS Research Team, Chungbuk National University, Cheongju, Chungbuk 28644 (Korea, Republic of)
Description
Highlights: • Structures and interaction energies of NMA and water molecules were explored. • ωB97X-D and M06-2X levels reproduced observed rotational constants of NMA and water hexamers. • Benchmark interaction energies were obtained by the CCSD(T)/CBS limit method. • The best performance was obtained using the double-hybrid DFTs against the benchmark energies. • ωB97X-D/def2-QZVP level can be an alternative for interaction energies of larger molecules. The CCSD(T), MP2, and DFT levels of theory with various basis sets are assessed for the structures and interaction energies of N-methylacetamide (NMA) and water molecules. The ωB97X-D/6–311++G(d,p) and ωB97X-D/6–31+G(2d,p) levels of theory seem to be adequate for optimization of the structures of NMA-water complexes. For seven NMA-water complexes, the best performances were obtained using the double-hybrid DSD-PBEP86-D3BJ and B2PLYP-D3BJ functionals with half-counterpoise corrections against the CCSD(T)/CBS-aTQ limit energies. However, the ωB97X-D/def2-QZVP//ωB97X-D/6–31+G(2d,p) level of theory can be an alternative method to calculate the interaction energies of the larger models.
Availability note (English)
Available from http://dx.doi.org/10.1016/j.cplett.2017.08.063Additional details
Identifiers
- DOI
- 10.1016/j.cplett.2017.08.063;
- PII
- S0009261417308357;
Publishing Information
- Journal Title
- Chemical Physics Letters
- Journal Volume
- 687
- Journal Page Range
- p. 23-30
- ISSN
- 0009-2614
- CODEN
- CHPLBC
INIS
- Country of Publication
- Netherlands
- Country of Input or Organization
- International Atomic Energy Agency (IAEA)
- INIS RN
- 51091107
- Subject category
- S74: ATOMIC AND MOLECULAR PHYSICS;
- Descriptors DEI
- CALCULATION METHODS; INTERACTIONS; MOLECULES; WATER
- Descriptors DEC
- HYDROGEN COMPOUNDS; OXYGEN COMPOUNDS
Optional Information
- Copyright
- Copyright (c) 2017 Elsevier B.V. All rights reserved.