Published November 2017 | Version v1
Journal article

Assessment of CCSD(T), MP2, and DFT methods for the calculations of structures and interaction energies of the peptide backbone with water molecules

  • 1. Graduate School of New Drug Discovery and Development, Chungnam National University, Daejeon 34134 (Korea, Republic of)
  • 2. Department of Chemistry and BK21 PLUS Research Team, Chungbuk National University, Cheongju, Chungbuk 28644 (Korea, Republic of)

Description

Highlights: • Structures and interaction energies of NMA and water molecules were explored. • ωB97X-D and M06-2X levels reproduced observed rotational constants of NMA and water hexamers. • Benchmark interaction energies were obtained by the CCSD(T)/CBS limit method. • The best performance was obtained using the double-hybrid DFTs against the benchmark energies. • ωB97X-D/def2-QZVP level can be an alternative for interaction energies of larger molecules. The CCSD(T), MP2, and DFT levels of theory with various basis sets are assessed for the structures and interaction energies of N-methylacetamide (NMA) and water molecules. The ωB97X-D/6–311++G(d,p) and ωB97X-D/6–31+G(2d,p) levels of theory seem to be adequate for optimization of the structures of NMA-water complexes. For seven NMA-water complexes, the best performances were obtained using the double-hybrid DSD-PBEP86-D3BJ and B2PLYP-D3BJ functionals with half-counterpoise corrections against the CCSD(T)/CBS-aTQ limit energies. However, the ωB97X-D/def2-QZVP//ωB97X-D/6–31+G(2d,p) level of theory can be an alternative method to calculate the interaction energies of the larger models.

Availability note (English)

Available from http://dx.doi.org/10.1016/j.cplett.2017.08.063

Additional details

Identifiers

DOI
10.1016/j.cplett.2017.08.063;
PII
S0009261417308357;

Publishing Information

Journal Title
Chemical Physics Letters
Journal Volume
687
Journal Page Range
p. 23-30
ISSN
0009-2614
CODEN
CHPLBC

INIS

Country of Publication
Netherlands
Country of Input or Organization
International Atomic Energy Agency (IAEA)
INIS RN
51091107
Subject category
S74: ATOMIC AND MOLECULAR PHYSICS;
Descriptors DEI
CALCULATION METHODS; INTERACTIONS; MOLECULES; WATER
Descriptors DEC
HYDROGEN COMPOUNDS; OXYGEN COMPOUNDS

Optional Information

Copyright
Copyright (c) 2017 Elsevier B.V. All rights reserved.