Cross-correlated relaxation rates between protein backbone H–X dipolar interactions
Creators
- 1. University of Colorado Denver, Department of Biochemistry and Molecular Genetics (United States)
Description
The relaxation interference between dipole–dipole interactions of two separate spin pairs carries structural and dynamics information. In particular, when compared to individual dynamic behavior of those spin pairs, such cross-correlated relaxation (CCR) rates report on the correlation between the spin pairs. We have recently mapped out correlated motion along the backbone of the protein GB3, using CCR rates among and between consecutive HN–N and Hα–Cα dipole–dipole interactions. Here, we provide a detailed account of the measurement of the four types of CCR rates. All rates were obtained from at least two different pulse sequences, of which the yet unpublished ones are presented. Detailed comparisons between the different methods and corrections for unwanted pathways demonstrate that the averaged CCR rates are highly accurate and precise with errors of 1.5–3% of the entire value ranges.
Additional details
Identifiers
Publishing Information
- Journal Title
- Journal of Biomolecular NMR
- Journal Volume
- 67
- Journal Issue
- 3
- Journal Page Range
- p. 211-232
- ISSN
- 0925-2738
INIS
- Country of Publication
- Netherlands
- Country of Input or Organization
- International Atomic Energy Agency (IAEA)
- INIS RN
- 48092851
- Subject category
- S62: RADIOLOGY AND NUCLEAR MEDICINE;
- Descriptors DEI
- COMPARATIVE EVALUATIONS; CORRECTIONS; CORRELATIONS; DIPOLES; ERRORS; HYDROGEN IONS 1 MINUS; INTERACTIONS; PROTEINS; RELAXATION; SPIN
- Descriptors DEC
- ANGULAR MOMENTUM; ANIONS; CHARGED PARTICLES; EVALUATION; HYDROGEN IONS; IONS; MULTIPOLES; ORGANIC COMPOUNDS; PARTICLE PROPERTIES
Optional Information
- Copyright
- Copyright (c) 2017 Springer Science+Business Media Dordrecht