Published February 11, 2009
| Version v1
Journal article
The effect of water on infrared spectra of DNA
Creators
- 1. Division of Mathematical and Physical Science, Graduate School of Natural Science and Technology, Kanazawa University, Kakuma-machi, Kanazawa 920-1192 (Japan)
Description
The effect of water on infrared (IR) spectra of DNA is studied by using first-principles calculations based on the hybrid density functional theory. Our calculations of frequencies of C = O stretching modes in DNA without water do not reproduce the IR spectra, whereas calculations for DNA surrounded by water reproduce the IR spectra well. We also find that the energy of adsorption of one water molecule around a C = O site is large (≅0.6 eV) owing to hydrogen bond formation. We therefore conclude that the effect of water plays an important role as regards IR spectra of DNA in a water solution.
Availability note (English)
Available from http://dx.doi.org/10.1088/0953-8984/21/6/064242Additional details
Identifiers
- DOI
- 10.1088/0953-8984/21/6/064242;
- PII
- S0953-8984(09)87377-3;
Publishing Information
- Journal Title
- Journal of Physics. Condensed Matter
- Journal Volume
- 21
- Journal Issue
- 6
- Journal Page Range
- [4 p.]
- ISSN
- 0953-8984
- CODEN
- JCOMEL
Conference
- Title
- 2. international conference on quantum simulators and design
- Dates
- 31 May - 3 Jun 2008
- Place
- Tokyo (Japan)
INIS
- Country of Publication
- United Kingdom
- Country of Input or Organization
- International Atomic Energy Agency (IAEA)
- INIS RN
- 41032378
- Subject category
- S74: ATOMIC AND MOLECULAR PHYSICS;
- Resource subtype / Literary indicator
- Conference
- Descriptors DEI
- ADSORPTION; AQUEOUS SOLUTIONS; DENSITY FUNCTIONAL METHOD; DNA; HYDROGEN; INFRARED SPECTRA; MOLECULES; SIMULATION; WATER
- Descriptors DEC
- CALCULATION METHODS; DISPERSIONS; ELEMENTS; HOMOGENEOUS MIXTURES; HYDROGEN COMPOUNDS; MIXTURES; NONMETALS; NUCLEIC ACIDS; ORGANIC COMPOUNDS; OXYGEN COMPOUNDS; SOLUTIONS; SORPTION; SPECTRA; VARIATIONAL METHODS