Published February 11, 2009 | Version v1
Journal article

The effect of water on infrared spectra of DNA

  • 1. Division of Mathematical and Physical Science, Graduate School of Natural Science and Technology, Kanazawa University, Kakuma-machi, Kanazawa 920-1192 (Japan)

Description

The effect of water on infrared (IR) spectra of DNA is studied by using first-principles calculations based on the hybrid density functional theory. Our calculations of frequencies of C = O stretching modes in DNA without water do not reproduce the IR spectra, whereas calculations for DNA surrounded by water reproduce the IR spectra well. We also find that the energy of adsorption of one water molecule around a C = O site is large (≅0.6 eV) owing to hydrogen bond formation. We therefore conclude that the effect of water plays an important role as regards IR spectra of DNA in a water solution.

Availability note (English)

Available from http://dx.doi.org/10.1088/0953-8984/21/6/064242

Additional details

Identifiers

DOI
10.1088/0953-8984/21/6/064242;
PII
S0953-8984(09)87377-3;

Publishing Information

Journal Title
Journal of Physics. Condensed Matter
Journal Volume
21
Journal Issue
6
Journal Page Range
[4 p.]
ISSN
0953-8984
CODEN
JCOMEL

Conference

Title
2. international conference on quantum simulators and design
Dates
31 May - 3 Jun 2008
Place
Tokyo (Japan)

INIS

Country of Publication
United Kingdom
Country of Input or Organization
International Atomic Energy Agency (IAEA)
INIS RN
41032378
Subject category
S74: ATOMIC AND MOLECULAR PHYSICS;
Resource subtype / Literary indicator
Conference
Descriptors DEI
ADSORPTION; AQUEOUS SOLUTIONS; DENSITY FUNCTIONAL METHOD; DNA; HYDROGEN; INFRARED SPECTRA; MOLECULES; SIMULATION; WATER
Descriptors DEC
CALCULATION METHODS; DISPERSIONS; ELEMENTS; HOMOGENEOUS MIXTURES; HYDROGEN COMPOUNDS; MIXTURES; NONMETALS; NUCLEIC ACIDS; ORGANIC COMPOUNDS; OXYGEN COMPOUNDS; SOLUTIONS; SORPTION; SPECTRA; VARIATIONAL METHODS