Coil-helix transition of polypeptide at water-lipid interface
- 1. Department of Physics, University of Rhode Island, Kingston, RI 02881 (United States)
- 2. Fachgruppe Physik, Bergische Universität Wuppertal, D-42097 Wuppertal (Germany)
Description
We present the exact solution of a microscopic statistical mechanical model for the transformation of a long polypeptide between an unstructured coil conformation and an α-helix conformation. The polypeptide is assumed to be adsorbed to the interface between a polar and a non-polar environment such as realized by water and the lipid bilayer of a membrane. The interfacial coil-helix transformation is the first stage in the folding process of helical membrane proteins. Depending on the values of model parameters, the conformation changes as a crossover, a discontinuous transition, or a continuous transition with helicity in the role of order parameter. Our model is constructed as a system of statistically interacting quasiparticles that are activated from the helix pseudo-vacuum. The particles represent links between adjacent residues in coil conformation that form a self-avoiding random walk in 2D. Explicit results are presented for helicity, entropy, heat capacity and the average numbers and sizes of both coil and helix segments. (paper)
Availability note (English)
Available from http://dx.doi.org/10.1088/1742-5468/2015/01/P01034Additional details
Identifiers
Publishing Information
- Journal Title
- Journal of Statistical Mechanics
- Journal Volume
- 2015
- Journal Issue
- 1
- Journal Page Range
- [23 p.]
- ISSN
- 1742-5468
INIS
- Country of Publication
- United Kingdom
- Country of Input or Organization
- International Atomic Energy Agency (IAEA)
- INIS RN
- 46042277
- Subject category
- S71: CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSICS;
- Descriptors DEI
- ENTROPY; EXACT SOLUTIONS; GRAPH THEORY; HELICITY; INTERFACES; LIPIDS; MEMBRANE PROTEINS; MEMBRANES; POLYPEPTIDES; QUASI PARTICLES; SPECIFIC HEAT; STATISTICAL MECHANICS; TWO-DIMENSIONAL CALCULATIONS; WATER
- Descriptors DEC
- HYDROGEN COMPOUNDS; MATHEMATICAL SOLUTIONS; MATHEMATICS; MECHANICS; ORGANIC COMPOUNDS; OXYGEN COMPOUNDS; PARTICLE PROPERTIES; PEPTIDES; PHYSICAL PROPERTIES; PROTEINS; THERMODYNAMIC PROPERTIES