A suite of Mathematica notebooks for the analysis of protein main chain 15N NMR relaxation data
Description
A suite of Mathematica notebooks has been designed to ease the analysis of protein main chain 15N NMR relaxation data collected at a single magnetic field strength. Individual notebooks were developed to perform the following tasks: nonlinear fitting of 15N-T1 and -T2 relaxation decays to a two parameter exponential decay, calculation of the principal components of the inertia tensor from protein structural coordinates, nonlinear optimization of the principal components and orientation of the axially symmetric rotational diffusion tensor, model-free analysis of 15N-T1, -T2, and {1H}-15N NOE data, and reduced spectral density analysis of the relaxation data. The principle features of the notebooks include use of a minimal number of input files, integrated notebook data management, ease of use, cross-platform compatibility, automatic visualization of results and generation of high-quality graphics, and output of analyses in text format
Additional details
Identifiers
Publishing Information
- Journal Title
- Journal of Biomolecular NMR
- Journal Volume
- 36
- Journal Issue
- 4
- Journal Page Range
- p. 215-224
- ISSN
- 0925-2738
INIS
- Country of Publication
- Netherlands
- Country of Input or Organization
- International Atomic Energy Agency (IAEA)
- INIS RN
- 39115770
- Subject category
- S60: APPLIED LIFE SCIENCES;
- Descriptors DEI
- AXIAL SYMMETRY; MAGNETIC FIELDS; MOMENT OF INERTIA; NITROGEN 15; NUCLEAR MAGNETIC RESONANCE; OPTIMIZATION; PROTEIN STRUCTURE; PROTEINS; RELAXATION; SPECTRAL DENSITY
- Descriptors DEC
- FUNCTIONS; ISOTOPES; LIGHT NUCLEI; MAGNETIC RESONANCE; NITROGEN ISOTOPES; NUCLEI; ODD-EVEN NUCLEI; ORGANIC COMPOUNDS; RESONANCE; SPECTRAL FUNCTIONS; STABLE ISOTOPES; SYMMETRY
Optional Information
- Copyright
- Copyright (c) 2006 Springer Science+Business Media B.V.