A population-level model from the microscopic dynamics in Escherichia coli chemotaxis via Langevin approximation
Creators
- 1. State Key Laboratory for Mesoscopic Physics, School of Physics, Peking University, Beijing 100871 (China)
- 2. BM T. J. Watson Research Center, Yorktown Heights, New York 10598 (United States)
Description
Recent extensive studies of Escherichia coli (E. coli) chemotaxis have achieved a deep understanding of its microscopic control dynamics. As a result, various quantitatively predictive models have been developed to describe the chemotactic behavior of E. coli motion. However, a population-level partial differential equation (PDE) that rationally incorporates such microscopic dynamics is still insufficient. Apart from the traditional Keller–Segel (K–S) equation, many existing population-level models developed from the microscopic dynamics are integro-PDEs. The difficulty comes mainly from cell tumbles which yield a velocity jumping process. Here, we propose a Langevin approximation method that avoids such a difficulty without appreciable loss of precision. The resulting model not only quantitatively reproduces the results of pathway-based single-cell simulators, but also provides new inside information on the mechanism of E. coli chemotaxis. Our study demonstrates a possible alternative in establishing a simple population-level model that allows for the complex microscopic mechanisms in bacterial chemotaxis
Availability note (English)
Available from http://dx.doi.org/10.1088/1674-1056/21/9/098701Additional details
Identifiers
Publishing Information
- Journal Title
- Chinese Physics. B
- Journal Volume
- 21
- Journal Issue
- 9
- Journal Page Range
- [11 p.]
- ISSN
- 1674-1056
INIS
- Country of Publication
- China
- Country of Input or Organization
- International Atomic Energy Agency (IAEA)
- INIS RN
- 45029574
- Subject category
- S71: CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSICS; S60: APPLIED LIFE SCIENCES;
- Descriptors DEI
- ACCURACY; APPROXIMATIONS; CONTROL; ESCHERICHIA COLI; INTEGRO-DIFFERENTIAL EQUATIONS; MATHEMATICAL MODELS; PARTIAL DIFFERENTIAL EQUATIONS; SIMULATORS
- Descriptors DEC
- ANALOG SYSTEMS; BACTERIA; CALCULATION METHODS; DIFFERENTIAL EQUATIONS; EQUATIONS; FUNCTIONAL MODELS; MICROORGANISMS