Published June 2016 | Version v1
Journal article

Parallelization of the model-based iterative reconstruction algorithm DIRA

  • 1. Medical Radiation Physics, Department of Medical and Health Sciences and Center for Medical Image Science and Visualisation, Linkoeping University, Linkoeping SE-58185 (Sweden)
  • 2. Computer Vision Laboratory, Department of Electrical Engineering, Linkoeping University, Linkoeping SE-58185 (Sweden)

Description

New paradigms for parallel programming have been devised to simplify software development on multi-core processors and many-core graphical processing units (GPU). Despite their obvious benefits, the parallelization of existing computer programs is not an easy task. In this work, the use of the Open Multiprocessing (OpenMP) and Open Computing Language (OpenCL) frameworks is considered for the parallelization of the model-based iterative reconstruction algorithm DIRA with the aim to significantly shorten the code's execution time. Selected routines were parallelized using OpenMP and OpenCL libraries; some routines were converted from MATLAB to C and optimised. Parallelization of the code with the OpenMP was easy and resulted in an overall speedup of 15 on a 16-core computer. Parallelization with OpenCL was more difficult owing to differences between the central processing unit and GPU architectures. The resulting speedup was substantially lower than the theoretical peak performance of the GPU; the cause was explained. (authors)

Availability note (English)

Available from doi: http://dx.doi.org/10.1093/rpd/ncv430

Additional details

Identifiers

Publishing Information

Journal Title
Radiation Protection Dosimetry
Journal Volume
169
Journal Issue
1-4
Journal Page Range
p. 405-409
ISSN
0144-8420

Conference

Title
4. Malmoe Conference on Medical Imaging - Optimisation in X-ray and Molecular Imaging 2015
Acronym
OXMI 2015
Dates
28-30 May 2015
Place
Gothenburg (Sweden)

INIS

Country of Publication
United Kingdom
Country of Input or Organization
France
INIS RN
47099472
Subject category
S97: MATHEMATICAL METHODS AND COMPUTING;
Resource subtype / Literary indicator
Conference
Descriptors DEI
ALGORITHMS; D CODES; ITERATIVE METHODS; LIBRARIES; M CODES; MATHEMATICAL MODELS; O CODES; PARALLEL PROCESSING; PERFORMANCE
Descriptors DEC
CALCULATION METHODS; COMPUTER CODES; MATHEMATICAL LOGIC; PROGRAMMING

Optional Information

Notes
14 refs.