Application of random matrix theory to biological networks
- 1. Department of Pathology, U.T. Southwestern Medical Center, 5323 Harry Hines Blvd. Dallas, TX 75390-9072 (United States)
- 2. Department of Computer Science, Clemson University, 100 McAdams Hall, Clemson, SC 29634 (United States)
- 3. Department of Physics, Xiangtan University, Hunan 411105 (China) and Oak Ridge National Laboratory, Oak Ridge, TN 37831 (United States)
- 4. Oak Ridge National Laboratory, Oak Ridge, TN 37831 (United States)
- 5. Department of Botany and Microbiology, University of Oklahoma, Norman, OK 73019 (United States) and Oak Ridge National Laboratory, Oak Ridge, TN 37831 (United States)
Description
We show that spectral fluctuation of interaction matrices of a yeast protein-protein interaction network and a yeast metabolic network follows the description of the Gaussian orthogonal ensemble (GOE) of random matrix theory (RMT). Furthermore, we demonstrate that while the global biological networks evaluated belong to GOE, removal of interactions between constituents transitions the networks to systems of isolated modules described by the Poisson distribution. Our results indicate that although biological networks are very different from other complex systems at the molecular level, they display the same statistical properties at network scale. The transition point provides a new objective approach for the identification of functional modules
Additional details
Identifiers
- DOI
- 10.1016/j.physleta.2006.04.076;
- arXiv
- arXiv:q-bio/0503035v1;
- PII
- S0375-9601(06)00653-0;
Publishing Information
- Journal Title
- Physics Letters. A
- Journal Volume
- 357
- Journal Issue
- 6
- Journal Page Range
- p. 420-423
- ISSN
- 0375-9601
- CODEN
- PYLAAG
INIS
- Country of Publication
- Netherlands
- Country of Input or Organization
- International Atomic Energy Agency (IAEA)
- INIS RN
- 38067131
- Subject category
- S71: CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSICS;
- Descriptors DEI
- BIOLOGICAL MODELS; MATRICES; PROTEINS; RANDOMNESS; YEASTS
- Descriptors DEC
- EUMYCOTA; FUNGI; MICROORGANISMS; ORGANIC COMPOUNDS; PLANTS
Optional Information
- Copyright
- Copyright (c) 2006 Elsevier Science B.V., Amsterdam, The Netherlands, All rights reserved.