Exact lower and upper bounds on stationary moments in stochastic biochemical systems
- 1. Department of Electrical and Computer Engineering, University of Delaware, Newark, DE (United States)
- 2. Department of Electrical and Computer Engineering, University of Minnesota, Minneapolis, MN (United States)
- 3. Department of Electical and Computer Engineering, Department of Biomedical Engineering, Department of Mathematical Sciences, University of Delaware, Newark, DE (United States)
Description
In the stochastic description of biochemical reaction systems, the time evolution of statistical moments for species population counts is described by a linear dynamical system. However, except for some ideal cases (such as zero- and first-order reaction kinetics), the moment dynamics is underdetermined as lower-order moments depend upon higher-order moments. Here, we propose a novel method to find exact lower and upper bounds on stationary moments for a given arbitrary system of biochemical reactions. The method exploits the fact that statistical moments of any positive-valued random variable must satisfy some constraints that are compactly represented through the positive semidefiniteness of moment matrices. Our analysis shows that solving moment equations at steady state in conjunction with constraints on moment matrices provides exact lower and upper bounds on the moments. These results are illustrated by three different examples—the commonly used logistic growth model, stochastic gene expression with auto-regulation and an activator–repressor gene network motif. Interestingly, in all cases the accuracy of the bounds is shown to improve as moment equations are expanded to include higher-order moments. Our results provide avenues for development of approximation methods that provide explicit bounds on moments for nonlinear stochastic systems that are otherwise analytically intractable. (letter)
Availability note (English)
Available from http://dx.doi.org/10.1088/1478-3975/aa75c6Additional details
Identifiers
Publishing Information
- Journal Title
- Physical Biology (Online)
- Journal Volume
- 14
- Journal Issue
- 4
- Journal Page Range
- [10 p.]
- ISSN
- 1478-3975
INIS
- Country of Publication
- United Kingdom
- Country of Input or Organization
- International Atomic Energy Agency (IAEA)
- INIS RN
- 50001307
- Subject category
- S71: CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSICS; S60: APPLIED LIFE SCIENCES;
- Descriptors DEI
- ACCURACY; DYNAMICAL SYSTEMS; EQUATIONS; GENES; NONLINEAR PROBLEMS; REACTION KINETICS; STEADY-STATE CONDITIONS; STOCHASTIC PROCESSES
- Descriptors DEC
- KINETICS