High-quality Thermodynamic Data on the Stability Changes of Proteins Upon Single-site Mutations
- 1. Department of BioModeling, BioInformatics and BioProcesses, Université Libre de Bruxelles, CP 165/61, Roosevelt Avenue 50, 1050 Brussels, Belgium and Interuniversity Institute of Bioinformatics in Brussels, CP 263, Triumph Bld, 1050 Brussels (Belgium)
Description
We have set up and manually curated a dataset containing experimental information on the impact of amino acid substitutions in a protein on its thermal stability. It consists of a repository of experimentally measured melting temperatures (Tm) and their changes upon point mutations (ΔTm) for proteins having a well-resolved x-ray structure. This high-quality dataset is designed for being used for the training or benchmarking of in silico thermal stability prediction methods. It also reports other experimentally measured thermodynamic quantities when available, i.e., the folding enthalpy (ΔH) and heat capacity (ΔCP) of the wild type proteins and their changes upon mutations (ΔΔH and ΔΔCP), as well as the change in folding free energy (ΔΔG) at a reference temperature. These data are analyzed in view of improving our insights into the correlation between thermal and thermodynamic stabilities, the asymmetry between the number of stabilizing and destabilizing mutations, and the difference in stabilization potential of thermostable versus mesostable proteins.
Additional details
Identifiers
- DOI
- 10.1063/1.4947493;
Publishing Information
- Journal Title
- Journal of Physical and Chemical Reference Data
- Journal Volume
- 45
- Journal Issue
- 2
- Journal Page Range
- p. 023104-023104.53
- ISSN
- 0047-2689
- CODEN
- JPCRBU
INIS
- Country of Publication
- United States
- Country of Input or Organization
- International Atomic Energy Agency (IAEA)
- INIS RN
- 48043638
- Subject category
- S37: INORGANIC, ORGANIC, PHYSICAL AND ANALYTICAL CHEMISTRY; S71: CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSICS;
- Descriptors DEI
- AMINO ACIDS; ASYMMETRY; BENCHMARKS; DATASETS; ENTHALPY; FREE ENERGY; GENE MUTATIONS; HEAT; MELTING; MELTING POINTS; PROTEINS; SPECIFIC HEAT; STABILITY; STABILIZATION; X RADIATION
- Descriptors DEC
- CARBOXYLIC ACIDS; DOCUMENT TYPES; ELECTROMAGNETIC RADIATION; ENERGY; IONIZING RADIATIONS; MUTATIONS; ORGANIC ACIDS; ORGANIC COMPOUNDS; PHASE TRANSFORMATIONS; PHYSICAL PROPERTIES; RADIATIONS; THERMODYNAMIC PROPERTIES; TRANSITION TEMPERATURE
Optional Information
- Notes
- (c) 2016 AIP Publishing LLC for the National Institute of Standards and Technology